Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   F7V86_RS12620 Genome accession   NZ_CP044444
Coordinates   2422770..2426162 (+) Length   1130 a.a.
NCBI ID   WP_151140224.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2417770..2431162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS12610 addA 2417832..2421536 (+) 3705 WP_025649561.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  F7V86_RS12615 sbcD 2421601..2422773 (+) 1173 WP_029973171.1 exonuclease subunit SbcD -
  F7V86_RS12620 sbcC 2422770..2426162 (+) 3393 WP_151140224.1 exonuclease subunit SbcC Machinery gene
  F7V86_RS12625 - 2426178..2426471 (+) 294 WP_017417418.1 hypothetical protein -
  F7V86_RS12630 - 2426515..2426733 (-) 219 WP_003155143.1 spore germination protein -
  F7V86_RS12635 - 2426773..2427168 (-) 396 WP_014417372.1 spore germination protein GerPE -
  F7V86_RS12640 - 2427168..2427344 (-) 177 WP_003155141.1 hypothetical protein -
  F7V86_RS12645 - 2427341..2427958 (-) 618 WP_017417419.1 spore germination protein GerPC -
  F7V86_RS12650 - 2427994..2428230 (-) 237 WP_007409164.1 spore germination protein GerPB -
  F7V86_RS12655 - 2428243..2428464 (-) 222 WP_003155135.1 spore germination protein -
  F7V86_RS12660 - 2428654..2428863 (-) 210 WP_025649564.1 aspartyl-phosphate phosphatase Spo0E family protein -
  F7V86_RS12665 - 2429079..2429984 (+) 906 WP_017417421.1 fumarylacetoacetate hydrolase family protein -
  F7V86_RS12670 - 2430078..2430434 (+) 357 WP_003155128.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128366.51 Da        Isoelectric Point: 5.6699

>NTDB_id=342678 F7V86_RS12620 WP_151140224.1 2422770..2426162(+) (sbcC) [Bacillus amyloliquefaciens strain KC41]
MKPILLTIKGLHSFREEQTIDFAGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKDEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKQAEQQFHEANERLEEAEKKRVRAK
ERFENHQEIWNLQTERDEYERREKKLEERRPYITDLTERLKEAETALALEPYADRYTEAVRRKQRAEQEHELAKRKSEAE
TVSFTRQNEAYEAWRAHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTNAEHSKKEEEYEAASKQLAGVKDRLTRG
KKRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERANLTTQLKNVEKLNGESESLTAKAKTEEEDITHAY
QTLQTVYHMVCETERSLKAAAERADKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRPRSAHETFSPDTA
VQEQLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAAFSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISAHQQTVKQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNEVCGDIPPNRIDAWQASIDEKDR
QAEECEKRIETSIAFLKEHEEEKERLQEMKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLEAVRQELQL
LKSKEQSLFDALKRAQQSLNDAKGRESGSLMSLRDAETSLEKAQNDWRVRSKDTGFTEPDQVKKSLLPQGRAEEMKKEID
EFLDTSKQLSANISRVTDKLADRRISEEEWTASVSLLKQAEAESGAAMEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNIFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTLEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=342678 F7V86_RS12620 WP_151140224.1 2422770..2426162(+) (sbcC) [Bacillus amyloliquefaciens strain KC41]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGGGAGGAACAGACCATTGATTTTGCCGGACTGTCAGG
AGCCGGGGTGTTCGGGATTTTCGGGCCGACCGGAAGCGGTAAATCGTCGATCCTTGATGCCATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATCCTGAATCATGCCGAAGATCAGCTCGCCGTCTCATTTACATTC
GCGCTTCAATCCGGCCACCGGGTTTCCTACAAGGTCGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTAAAAACCGC
CCTCTGCCGCCTGATTGAAATCAAAGACGAACAAACGGTGCTGGCCGATAAAGCGAATGAAGTGAACAAAAAGGTAGAGG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTGCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTT
AAAGGCGCGGAAAGAAGACATATGCTCCAGCGCCTGTTTAATCTGGAACAGTACGGGGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAAATGCTGGCGGAACAATCCGGGCTCGGAGACGCAGGAGAAGATG
CGCTGAAGCAGGCTGAACAGCAGTTTCACGAAGCGAACGAACGGCTTGAAGAAGCTGAGAAGAAACGGGTCCGGGCAAAA
GAGCGCTTTGAGAATCACCAGGAAATTTGGAACCTGCAGACAGAAAGAGATGAATATGAGCGCCGGGAGAAAAAGCTTGA
GGAAAGACGCCCGTACATCACGGATTTGACTGAGCGTCTTAAAGAGGCGGAAACAGCTCTCGCCCTTGAGCCGTACGCAG
ACCGTTACACAGAAGCCGTCCGCCGGAAGCAGCGCGCCGAACAGGAACACGAACTGGCCAAACGGAAATCAGAGGCGGAA
ACCGTTTCATTTACCCGGCAAAATGAAGCCTATGAAGCATGGCGGGCCCATAAGGCCGAACAGGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGACTTTCAGCCATTGAACAAAAACTGCTTGAAGCGAAAAAAGAAGCGGAAAAAACAAATG
CGGAACACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGGCCGGAGTGAAAGACCGCCTGACCCGCGGT
AAAAAGAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAGGTGACCGCCGATGAACGGAAAAAATGCCAGACCGC
AGCACAGCTGGCGGCGGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAACGGGCCAATCTGACAACGCAGCTGAAAA
ACGTGGAGAAGCTGAACGGAGAAAGCGAGTCGCTCACAGCGAAGGCGAAAACGGAAGAGGAAGACATTACGCACGCTTAT
CAAACGCTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCTGACAAAAC
GCAAGCCGATCTCCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCCACGCAGCATGACCGCCCGCGTTCCGCTCATGAAACATTCTCGCCTGATACGGCT
GTACAGGAACAGTTGCAGCAGGTTGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACAGCCAAGGT
TGCATTAGAAGAGCAGTCAGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAGCGCCCGGGTTCCGGAGCTGGAAGCCG
CTTTCTCCATCAGCGGACGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCTTGGAATGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACAAGACTGATCAGCGCGCATCAGCAGACGGTGAAACAAGCTGAGCAGCTGGCCGAACG
AATCCGCTACGAGGAAAAAGAAGCCGACCGTCTCAGACATTCATTAGAAGAGCTTGAATCGCTGTCAGAAAGCCGATTGA
ATCAGTACAACGAAGTCTGCGGTGATATTCCGCCAAACCGGATTGACGCCTGGCAGGCTTCGATAGATGAGAAGGACAGG
CAGGCAGAAGAATGTGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGAGGAGAAAGAACGCCTGCA
GGAGATGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCTGAGCGCCTGCAGCAGGTGATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCAATTTCCGCAAAGCTTGAAGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCGAAAGAACAGTCCCTATTCGATGCGCTGAAGCGGGCGCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGTCTCATGTCACTCAGGGATGCTGAGACCTCCCTTGAGAAAGCGCAAAACGACTGGCGCGTGAGGTCAAAAGACA
CCGGGTTTACCGAGCCGGACCAAGTCAAAAAAAGTCTGCTTCCGCAAGGGCGTGCAGAGGAAATGAAAAAAGAAATTGAT
GAGTTCCTGGACACCTCAAAACAGCTATCGGCAAATATCAGCCGTGTTACTGATAAATTAGCCGACCGCCGGATATCAGA
GGAAGAATGGACAGCATCCGTTTCTCTGCTGAAGCAGGCAGAGGCTGAGTCAGGCGCCGCCATGGAGGAAAAAGGAGCAC
AGGCAAAAGCCTTCGCGGTTATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATATATTCGTCGAATTTTTAGCGGAAGAACAGCTGGA
AAGCGTGGCTCGGGACGCCTCTGCCCGTCTCGGAGCGCTGACAAGGCAGCGGTACGCCATATTAGTCGATTCAGAAGGCG
GTTTCGTCATGCGTGATGACGCGAACGGAGGCGTCAAACGGCCCGTATCAAGCCTTTCCGGCGGGGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGCGGGGGCAATACCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACTCTTGACCAAGGGCTCTTAGACACCGTTGTCACAGCGCTCGAAAAGCTGCAATCGGACAACTTATCCG
TCGGAGTGATCAGCCATGTGCAGGAGCTGAGAGCGCGTCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGG
AAAGGCACCCGGGTCACATTGGAGATCATGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-266)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.229

100

0.645