Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   F7V86_RS11100 Genome accession   NZ_CP044444
Coordinates   2138454..2139170 (+) Length   238 a.a.
NCBI ID   WP_151140201.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2133454..2144170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS11070 - 2133634..2134011 (+) 378 WP_017419104.1 DUF1992 domain-containing protein -
  F7V86_RS11075 - 2134021..2134452 (-) 432 WP_017419105.1 Hsp20/alpha crystallin family protein -
  F7V86_RS11080 - 2134468..2134710 (-) 243 WP_003155595.1 spore germination protein -
  F7V86_RS11085 - 2134725..2134985 (-) 261 WP_007408496.1 spore germination protein -
  F7V86_RS11090 treP 2135256..2136671 (+) 1416 WP_021493878.1 PTS system trehalose-specific EIIBC component -
  F7V86_RS11095 treC 2136747..2138432 (+) 1686 WP_129093626.1 alpha,alpha-phosphotrehalase -
  F7V86_RS11100 treR 2138454..2139170 (+) 717 WP_151140201.1 trehalose operon repressor Regulator
  F7V86_RS11105 - 2139303..2139968 (+) 666 WP_061861964.1 NAD(P)H-dependent oxidoreductase -
  F7V86_RS11110 - 2140004..2140765 (-) 762 WP_104843172.1 YibE/F family protein -
  F7V86_RS11115 - 2140762..2141901 (-) 1140 WP_151140202.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27425.43 Da        Isoelectric Point: 6.9757

>NTDB_id=342665 F7V86_RS11100 WP_151140201.1 2138454..2139170(+) (treR) [Bacillus amyloliquefaciens strain KC41]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLIPPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNLVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=342665 F7V86_RS11100 WP_151140201.1 2138454..2139170(+) (treR) [Bacillus amyloliquefaciens strain KC41]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGTTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCCGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTTGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCTCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424