Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   F7V86_RS09325 Genome accession   NZ_CP044444
Coordinates   1800677..1801111 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain KC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795677..1806111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS09295 - 1796350..1797210 (+) 861 WP_063636978.1 SDR family oxidoreductase -
  F7V86_RS09300 - 1797223..1797726 (+) 504 WP_014304360.1 D-lyxose/D-mannose family sugar isomerase -
  F7V86_RS09305 - 1797813..1798436 (+) 624 WP_038456983.1 GNAT family N-acetyltransferase -
  F7V86_RS09310 - 1798443..1798865 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  F7V86_RS09315 - 1799363..1800172 (+) 810 WP_014416933.1 lipid II flippase Amj family protein -
  F7V86_RS09320 - 1800210..1800500 (-) 291 WP_063636977.1 DUF3817 domain-containing protein -
  F7V86_RS09325 lrpC 1800677..1801111 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  F7V86_RS09330 - 1801175..1803361 (+) 2187 WP_003156261.1 DNA topoisomerase III -
  F7V86_RS09335 - 1803595..1804680 (+) 1086 WP_017419246.1 hypothetical protein -
  F7V86_RS09340 - 1804661..1805509 (+) 849 WP_025649983.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=342660 F7V86_RS09325 WP_007410180.1 1800677..1801111(+) (lrpC) [Bacillus amyloliquefaciens strain KC41]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=342660 F7V86_RS09325 WP_007410180.1 1800677..1801111(+) (lrpC) [Bacillus amyloliquefaciens strain KC41]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAACGCTATACAT
TGGACATTGATCAAAAAAAGATCGGACTTCCCGTTTCCTGCATTGTCGAAGCGACGGTAAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792

Multiple sequence alignment