Detailed information NTG0342649

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: F7V86_RS08560
• Genome accession: NZ_CP044444
• Coordinates: 1624624..1625745 (+)
• Length: 373 a.a.
• NCBI ID: WP_014416837.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain KC41
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1619624..1630745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7V86_RS08540	-	1619931..1620926 (-)	996	WP_017419346.1	DUF5105 domain-containing protein	-
F7V86_RS08545	-	1621049..1622455 (+)	1407	WP_065180916.1	YcdB/YcdC domain-containing protein	-
F7V86_RS08550	-	1622656..1624014 (+)	1359	WP_065180917.1	YcdB/YcdC domain-containing protein	-
F7V86_RS08555	-	1624011..1624514 (-)	504	WP_017419349.1	M15 family metallopeptidase	-
F7V86_RS08560	rapF	1624624..1625745 (+)	1122	WP_014416837.1	tetratricopeptide repeat protein	Regulator
F7V86_RS08565	-	1625862..1626638 (+)	777	WP_017419351.1	glucose 1-dehydrogenase	-
F7V86_RS08570	-	1626642..1627880 (-)	1239	WP_017419352.1	MFS transporter	-
F7V86_RS08575	-	1627955..1628212 (-)	258	WP_065180918.1	histidine kinase	-
F7V86_RS08580	-	1628228..1628851 (-)	624	WP_065180919.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
F7V86_RS08585	-	1628853..1629494 (-)	642	WP_015416749.1	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44299.50 Da
• Isoelectric Point: 5.0806

>NTDB_id=342649 F7V86_RS08560 WP_014416837.1 1624624..1625745(+) (rapF) [Bacillus amyloliquefaciens strain KC41]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQFELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYLTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=342649 F7V86_RS08560 WP_014416837.1 1624624..1625745(+) (rapF) [Bacillus amyloliquefaciens strain KC41]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATTTGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAACTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTTTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCAGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCCGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAATGGGAAG
ATGAGATCTATCTGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.857	99.464	0.426
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402