Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   F7V86_RS06225 Genome accession   NZ_CP044444
Coordinates   1189100..1189789 (-) Length   229 a.a.
NCBI ID   WP_021494677.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184100..1194789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS06205 - 1185005..1185352 (-) 348 WP_004393256.1 YxeA family protein -
  F7V86_RS06210 yxdM 1185366..1187234 (-) 1869 WP_151140130.1 ABC transporter permease YxdM -
  F7V86_RS06215 yxdL 1187209..1187982 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  F7V86_RS06220 yxdK 1188126..1189103 (-) 978 WP_151140131.1 two-component system sensor histidine kinase YxdK -
  F7V86_RS06225 braR 1189100..1189789 (-) 690 WP_021494677.1 two-component system response regulator YxdJ Regulator
  F7V86_RS06230 iolJ 1189897..1190769 (-) 873 WP_063636554.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  F7V86_RS06235 iolI 1190772..1191614 (-) 843 WP_007407832.1 2-keto-myo-inositol isomerase -
  F7V86_RS06240 - 1191702..1192571 (-) 870 WP_017418544.1 sugar phosphate isomerase/epimerase family protein -
  F7V86_RS06245 - 1192591..1193625 (-) 1035 WP_063636555.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26561.26 Da        Isoelectric Point: 4.8564

>NTDB_id=342630 F7V86_RS06225 WP_021494677.1 1189100..1189789(-) (braR) [Bacillus amyloliquefaciens strain KC41]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDVFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=342630 F7V86_RS06225 WP_021494677.1 1189100..1189789(-) (braR) [Bacillus amyloliquefaciens strain KC41]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCATTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGACGAAAAAAGCGAGCTTTCTAAGAAAGAAAGC
AAGCTTTTGGAAGTTCTGCTGGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CGTTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397