Detailed information NTG0342603

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: F7V86_RS01760
• Genome accession: NZ_CP044444
• Coordinates: 331354..332484 (-)
• Length: 376 a.a.
• NCBI ID: WP_025650425.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain KC41
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 326354..337484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7V86_RS01735	-	326617..327462 (-)	846	WP_014418724.1	glucosaminidase domain-containing protein	-
F7V86_RS01740	hmpA	327604..328779 (-)	1176	WP_017419519.1	NO-inducible flavohemoprotein	-
F7V86_RS01745	-	328998..329639 (+)	642	WP_017419520.1	cupin domain-containing protein	-
F7V86_RS01750	-	329706..330026 (-)	321	WP_014418727.1	hypothetical protein	-
F7V86_RS01760	rapC	331354..332484 (-)	1131	WP_025650425.1	tetratricopeptide repeat protein	Regulator
F7V86_RS01765	-	332634..333014 (-)	381	WP_017419390.1	hypothetical protein	-
F7V86_RS01770	-	333015..333647 (-)	633	WP_017419391.1	VanZ family protein	-
F7V86_RS01775	-	333840..334259 (-)	420	WP_017419392.1	hypothetical protein	-
F7V86_RS21520	-	334367..334447 (-)	81	Protein_333	peptidoglycan-binding protein	-
F7V86_RS01780	-	334559..334960 (-)	402	WP_017419394.1	DUF1878 family protein	-
F7V86_RS01785	-	334979..335437 (-)	459	WP_224443207.1	hypothetical protein	-
F7V86_RS01790	-	335769..336093 (-)	325	Protein_336	peptidoglycan-binding protein	-
F7V86_RS01795	-	336306..336854 (-)	549	WP_017419396.1	phage integrase SAM-like domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44395.88 Da
• Isoelectric Point: 6.6686

>NTDB_id=342603 F7V86_RS01760 WP_025650425.1 331354..332484(-) (rapC) [Bacillus amyloliquefaciens strain KC41]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIAE
LLEKIEASNKGISGLLFYYSLFFRGMYEFDQKQYVKAIGFYKEAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHISMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYNKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIFQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=342603 F7V86_RS01760 WP_025650425.1 331354..332484(-) (rapC) [Bacillus amyloliquefaciens strain KC41]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACCGACAATTGCCGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTTCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAAAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACATCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
GAATTATGTAGACTTTAAACGTTATGAAAAAAGCTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAATAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAGAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (193-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.633	100	0.41