Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ERY13_RS19875 Genome accession   NZ_CP035456
Coordinates   4484985..4485410 (-) Length   141 a.a.
NCBI ID   WP_041619176.1    Uniprot ID   -
Organism   Paenibacillus mucilaginosus strain KN-18     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4473914..4493004 4484985..4485410 within 0


Gene organization within MGE regions


Location: 4473914..4493004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERY13_RS19855 (ERY13_19555) - 4473914..4474810 (-) 897 WP_014370583.1 DMT family transporter -
  ERY13_RS19860 (ERY13_19560) - 4475330..4476574 (+) 1245 WP_013918143.1 hypothetical protein -
  ERY13_RS19865 (ERY13_19565) - 4476719..4479628 (-) 2910 WP_014370584.1 S-layer homology domain-containing protein -
  ERY13_RS19870 (ERY13_19570) - 4479712..4484799 (-) 5088 WP_277713096.1 Ig-like domain-containing protein -
  ERY13_RS19875 (ERY13_19575) nucA/comI 4484985..4485410 (-) 426 WP_041619176.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ERY13_RS19880 (ERY13_19580) - 4485476..4485931 (-) 456 WP_014370589.1 MarR family winged helix-turn-helix transcriptional regulator -
  ERY13_RS19885 (ERY13_19585) - 4486084..4487004 (+) 921 WP_014370590.1 SDR family NAD(P)-dependent oxidoreductase -
  ERY13_RS19890 (ERY13_19590) - 4486954..4488045 (-) 1092 WP_238540244.1 vWA domain-containing protein -
  ERY13_RS19895 (ERY13_19595) - 4488057..4489166 (-) 1110 WP_277713097.1 AAA family ATPase -
  ERY13_RS19900 (ERY13_19600) - 4489191..4489670 (-) 480 WP_014370591.1 DUF6530 family protein -
  ERY13_RS19905 (ERY13_19605) - 4489912..4490829 (-) 918 WP_013918147.1 alpha/beta hydrolase -
  ERY13_RS19910 (ERY13_19610) - 4490860..4491711 (+) 852 WP_014370592.1 helix-turn-helix transcriptional regulator -
  ERY13_RS19915 (ERY13_19615) - 4491775..4492332 (-) 558 WP_014370593.1 NADAR family protein -
  ERY13_RS19920 (ERY13_19620) - 4492357..4493004 (-) 648 WP_014370594.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15803.03 Da        Isoelectric Point: 4.4812

>NTDB_id=342554 ERY13_RS19875 WP_041619176.1 4484985..4485410(-) (nucA/comI) [Paenibacillus mucilaginosus strain KN-18]
MKKVRLIVQMIFFLILAIVVFQVLGEQDTQQPDGVDYTLILPADRYPETLKHIREAIAEGESAVCTIDREGAEENRKESL
KGIPTKKGYDRDEWPMAMCAEGGTGADVEYVPFADNRGAGSWIGNQLERFPDGSRILFQLP

Nucleotide


Download         Length: 426 bp        

>NTDB_id=342554 ERY13_RS19875 WP_041619176.1 4484985..4485410(-) (nucA/comI) [Paenibacillus mucilaginosus strain KN-18]
ATGAAGAAGGTGCGCTTGATCGTTCAGATGATATTTTTTCTCATCCTTGCTATTGTTGTATTTCAAGTTCTTGGAGAACA
GGATACACAGCAGCCAGACGGCGTAGACTATACGCTGATTCTGCCGGCGGACCGGTATCCCGAGACGCTGAAGCATATCC
GGGAGGCTATAGCCGAAGGGGAATCGGCTGTGTGTACGATTGACCGGGAGGGGGCGGAGGAGAACCGCAAAGAATCGCTG
AAAGGCATTCCGACGAAAAAGGGCTACGACCGGGATGAGTGGCCTATGGCGATGTGTGCCGAGGGCGGCACCGGTGCGGA
TGTAGAGTATGTGCCCTTCGCGGATAATAGGGGGGCAGGCTCATGGATCGGCAATCAGCTCGAGCGGTTCCCGGACGGAA
GCCGGATTTTATTTCAATTGCCATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.478

81.56

0.518

Multiple sequence alignment