Detailed information NTG0342491

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNW43_RS17370
• Genome accession: NZ_CP044410
• Coordinates: 3572520..3573512 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain ecMN1F
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3567520..3578512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNW43_RS17350 (FNW43_17350)	otnK	3568296..3569462 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
FNW43_RS17355 (FNW43_17355)	ygbL	3569554..3570192 (+)	639	WP_001278994.1	aldolase	-
FNW43_RS17360 (FNW43_17360)	ygbM	3570197..3570973 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FNW43_RS17365 (FNW43_17365)	ygbN	3571062..3572426 (+)	1365	WP_000104441.1	GntP family transporter	-
FNW43_RS17370 (FNW43_17370)	rpoS	3572520..3573512 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
FNW43_RS17375 (FNW43_17375)	nlpD	3573575..3574669 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FNW43_RS17380 (FNW43_17380)	pcm	3574854..3575480 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNW43_RS17385 (FNW43_17385)	surE	3575474..3576235 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNW43_RS17390 (FNW43_17390)	truD	3576216..3577265 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FNW43_RS17395 (FNW43_17395)	ispF	3577262..3577741 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNW43_RS17400 (FNW43_17400)	ispD	3577741..3578450 (-)	710	Protein_3402	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=342491 FNW43_RS17370 WP_000081588.1 3572520..3573512(-) (rpoS) [Escherichia coli strain ecMN1F]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=342491 FNW43_RS17370 WP_000081588.1 3572520..3573512(-) (rpoS) [Escherichia coli strain ecMN1F]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715