Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SALIVB_RS08745 Genome accession   NC_015760
Coordinates   1909248..1912568 (-) Length   1106 a.a.
NCBI ID   WP_013991145.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1904248..1917568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS08735 (SALIVB_1823) - 1904295..1905544 (+) 1250 Protein_1697 ISL3 family transposase -
  SALIVB_RS08740 (SALIVB_1824) rexA 1905605..1909258 (-) 3654 WP_013991144.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SALIVB_RS08745 (SALIVB_1825) rexB 1909248..1912568 (-) 3321 WP_013991145.1 ATP-dependent nuclease subunit B Machinery gene
  SALIVB_RS08750 (SALIVB_1826) - 1912945..1914194 (+) 1250 Protein_1700 ISL3 family transposase -
  SALIVB_RS08755 (SALIVB_1827) - 1914236..1915609 (-) 1374 WP_013991146.1 GHKL domain-containing protein -
  SALIVB_RS08760 (SALIVB_1828) - 1915645..1916955 (-) 1311 WP_013991147.1 hypothetical protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 125950.05 Da        Isoelectric Point: 4.7430

>NTDB_id=34239 SALIVB_RS08745 WP_013991145.1 1909248..1912568(-) (rexB) [Streptococcus salivarius CCHSS3]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVGLYKELQQANMTVLDLQHLDQVEKQEDLLRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYRANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTVDEQLTDQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEESMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTADSRDKYDLDQLNTLRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQLPSQM
ASLTAKASEAEKEQNEQVWNAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEVTDEDRSLDIVTQSNSQRGHFVAMSLFNSASEQLVLSQPQILNETQDD
MSVYLKELLDLGLSLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESHLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTSAAEVIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMGKDEDDNEMQVAEKIVPFPVTDQAVTADNKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=34239 SALIVB_RS08745 WP_013991145.1 1909248..1912568(-) (rexB) [Streptococcus salivarius CCHSS3]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAGGG
AAAGAGGGTATTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCGAGATACTTTATTCTCAATACGAGCAACCCCAAAACGCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGCGATGATGAGCTCAAGGTTTATGGCCG
TTTGCGCAAGGATAGTAACTTTATTAATCAATTGGTAGGCCTTTATAAAGAGTTGCAGCAGGCTAATATGACGGTTCTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGCTCAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAACTTAGTGCCTTCTTCAAGGAAATTACCTCAGGACATCTGGATAAGGCACTGGGTAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTCTCTGCCGAGGAGGAGGCCCTAGTTGCTCTCTTGAATGATAAGTGCC
ACCAGATTGTCATTGGGACTTATGCCAGTCAAAAAGCTTATAGGGCTAACTTTGTTTATGGCAATGTTTATCAGGCCTCA
GTGGATTTTTTGAGAACTTTGGCTCAGACCTATAAGGTGACACCCGACTATGTAACGACAGACAAAGAGGGCAATCCTTC
TTTTGCGCGCATTAGCCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGGTAGATGAGCAGTTGACCGATCAAGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAGGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCA
GATGGCAAGCGCTATAAGGATATCTTGGTCCTGCTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGTCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAAGCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTGG
AACGTATCAAACGCTACAATTATCGTGCTGAGGATCTGCTTAATCTCGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGACTTAGATCTTTTTGAGTATTATGTCAATTTTGCAGACATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
CGATAGTCGTGATAAGTATGATTTAGACCAGCTCAATACCTTGCGGTCACAGTTGGTAGAGCCCTTGGACAAGTTGCTTA
ATAGTCGCAAACAAAAGGGTTCTAGTCTACTCAAGAAACTAGTGGTCTTTTTAGAGGCTGTGCAATTGCCAAGCCAAATG
GCTAGTTTGACTGCCAAGGCCAGTGAGGCTGAAAAAGAACAGAATGAACAGGTCTGGAATGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGAGAAGAAACACTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCAGGAATGTTGGCCT
GTGATTACCGTACGGTCCCAGCCACTGTCGATGTGGTCAATGTGAAAAAATACGATTTGATTCAACCACATTCTGCTCCT
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCTAAGGTAGGGCAAAATAAGAGTCTCCTGTCTGACGAGGAACG
TAGTCGTATCAATGAGGTGACGGATGAAGACAGGAGTTTGGATATTGTTACGCAGAGCAATAGTCAGCGGGGGCATTTTG
TGGCTATGTCACTTTTTAATTCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACTCAAGATGAC
ATGTCGGTTTATTTGAAAGAGCTGCTTGACCTTGGTCTTTCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCCAAGGG
TGACCAGATTGGGAACTACAAGGACCTCCTATCGACTGTCATTGCCCTTAACAGTAGCCATTTAGATGCTGATTTGGATA
AGGAAACGCAGACTTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTTGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTGAAATT
ATCAGCCTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGGCTTGAAGAGTTGG
AGTCCATCCATCCAGATGCTCGACACCACGGGACTTATTTGCACCGTGTCTTTGAGCGTGTTATGGGGGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCTTTTGAAATTCTCTATACGGAGGA
CCAAGAGAGTCACTTGTCTCGTCAGATTTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGATAATGCGGCTG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGATTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAGAAATTCTACAA
TGGTCTCAGTCCGCAGTTGGTAACCTATCTGGAGGCCCTTCGACAAACCTATAAGGTGGATGCTGATCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAACTTAACTTAGCTCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTCATAAG
GAATTAACCTATAAGGGACTTTTTGTGGCTTCAGAAACAGAGCATTTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGCTCGATTACAATATTAAGCTCTTTACAAGTGCTGCTGAAGTTATTCGAA
GTGGGAATTTTGCGGTTAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGGCTATTACTCATTTT
GAGGCTGACCGTCACATGGGACAGGCGCGAAAACTCTTGCGTTTACCAAGCAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGGAAAAGATGAGGACGATAATGAGATGCAAGTTGCTGAAAAAATCGTCCCCTTTCCAGTCACTGATCAAGCTGTGA
CAGCAGACAACAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.618

98.463

0.429