Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BACIH_RS17155 Genome accession   NZ_CP044360
Coordinates   3449103..3450233 (-) Length   376 a.a.
NCBI ID   WP_007407584.1    Uniprot ID   A7Z9N9
Organism   Bacillus amyloliquefaciens strain V167     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3444103..3455233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS17125 (BACIH_3499) - 3444946..3445350 (-) 405 WP_007614341.1 Rrf2 family transcriptional regulator -
  BACIH_RS17130 (BACIH_3500) ureC 3445491..3447200 (-) 1710 WP_012118651.1 urease subunit alpha -
  BACIH_RS17135 (BACIH_3501) ureB 3447197..3447571 (-) 375 WP_012118652.1 urease subunit beta -
  BACIH_RS17140 (BACIH_3502) ureA 3447568..3447885 (-) 318 WP_007407581.1 urease subunit gamma -
  BACIH_RS17145 (BACIH_3504) - 3448239..3448427 (-) 189 WP_012118653.1 CsbD family protein -
  BACIH_RS17150 (BACIH_3505) - 3448502..3448981 (-) 480 WP_012118654.1 hypothetical protein -
  BACIH_RS17155 (BACIH_3506) rapC 3449103..3450233 (-) 1131 WP_007407584.1 tetratricopeptide repeat protein Regulator
  BACIH_RS17160 (BACIH_3507) moaA 3450424..3451449 (-) 1026 WP_012118655.1 GTP 3',8-cyclase MoaA -
  BACIH_RS17165 (BACIH_3508) fdhD 3451467..3452255 (-) 789 WP_012118656.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BACIH_RS19645 (BACIH_3509) - 3452350..3452514 (-) 165 WP_007407587.1 hypothetical protein -
  BACIH_RS17170 (BACIH_3510) - 3452600..3453280 (-) 681 WP_012118657.1 VWA domain-containing protein -
  BACIH_RS17175 (BACIH_3513) - 3453590..3454276 (-) 687 WP_007407590.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44934.03 Da        Isoelectric Point: 5.3221

>NTDB_id=342332 BACIH_RS17155 WP_007407584.1 3449103..3450233(-) (rapC) [Bacillus amyloliquefaciens strain V167]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=342332 BACIH_RS17155 WP_007407584.1 3449103..3450233(-) (rapC) [Bacillus amyloliquefaciens strain V167]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTTCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z9N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399

Multiple sequence alignment