Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | BACIH_RS09845 | Genome accession | NZ_CP044360 |
| Coordinates | 2030003..2031139 (+) | Length | 378 a.a. |
| NCBI ID | WP_012117791.1 | Uniprot ID | A7Z5Q9 |
| Organism | Bacillus amyloliquefaciens strain V167 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2025003..2036139
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BACIH_RS09805 (BACIH_2006) | phyC | 2025048..2026199 (-) | 1152 | WP_012117785.1 | 3-phytase | - |
| BACIH_RS09810 (BACIH_2007) | - | 2026515..2026940 (+) | 426 | WP_003153663.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| BACIH_RS09815 (BACIH_2008) | sprB | 2026974..2027150 (-) | 177 | WP_003153662.1 | recombination directionality factor SprB | - |
| BACIH_RS09825 | - | 2027512..2027769 (-) | 258 | WP_023356967.1 | DUF3221 domain-containing protein | - |
| BACIH_RS19800 | - | 2028311..2028547 (+) | 237 | WP_077411073.1 | hypothetical protein | - |
| BACIH_RS09835 | - | 2028673..2029047 (+) | 375 | WP_007407921.1 | YoqO family protein | - |
| BACIH_RS20030 | - | 2029064..2029142 (-) | 79 | Protein_1903 | hypothetical protein | - |
| BACIH_RS09840 | - | 2029281..2029733 (-) | 453 | WP_012117790.1 | hypothetical protein | - |
| BACIH_RS09845 (BACIH_2010) | rapF | 2030003..2031139 (+) | 1137 | WP_012117791.1 | Rap family tetratricopeptide repeat protein | Regulator |
| BACIH_RS09850 | - | 2031129..2031311 (+) | 183 | WP_041482200.1 | hypothetical protein | - |
| BACIH_RS09855 | - | 2031342..2031971 (-) | 630 | Protein_1907 | UV damage repair protein UvrX | - |
| BACIH_RS09860 (BACIH_2012) | - | 2032034..2033446 (-) | 1413 | WP_012117793.1 | rhodanese-like domain-containing protein | - |
| BACIH_RS09865 (BACIH_2013) | - | 2033605..2034804 (-) | 1200 | WP_012117794.1 | FAD/NAD(P)-binding oxidoreductase | - |
| BACIH_RS09870 (BACIH_2014) | - | 2034983..2035629 (-) | 647 | Protein_1910 | response regulator | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 44525.17 Da Isoelectric Point: 5.0394
>NTDB_id=342276 BACIH_RS09845 WP_012117791.1 2030003..2031139(+) (rapF) [Bacillus amyloliquefaciens strain V167]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKDEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKVS
DLLEKIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKLAVVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGNMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVEGKQVCKQGLTLSKALNDDVLGKMFDFLMGLFVENDKDRLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKDEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKVS
DLLEKIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKLAVVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGNMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVEGKQVCKQGLTLSKALNDDVLGKMFDFLMGLFVENDKDRLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI
Nucleotide
Download Length: 1137 bp
>NTDB_id=342276 BACIH_RS09845 WP_012117791.1 2030003..2031139(+) (rapF) [Bacillus amyloliquefaciens strain V167]
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTGTTCAGTGTTGC
AGATGCAGAAATTCTAAAGGATGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGACTTATTGTTGTACTATT
CGCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGCCCAAAAGTTTCA
GACTTATTAGAAAAGATCGAAAGTAAACAAAGTGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAATACGAATATCTTAAGGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGTTAGCCGTTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAGGTAGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATCGTTCAAGCAATAGAAACCTACAAAGCGCACGAAACGTACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGAAATATGGAGAAAGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTACTAGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTGTTCAACACGGTTGAGGGAAAACAGGTTTGTAAACAAGGTCTCACGCTATCAAAGG
CGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGACCGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACCGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTGTTCAGTGTTGC
AGATGCAGAAATTCTAAAGGATGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGACTTATTGTTGTACTATT
CGCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGCCCAAAAGTTTCA
GACTTATTAGAAAAGATCGAAAGTAAACAAAGTGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAATACGAATATCTTAAGGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGTTAGCCGTTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAGGTAGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATCGTTCAAGCAATAGAAACCTACAAAGCGCACGAAACGTACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGAAATATGGAGAAAGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTACTAGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTGTTCAACACGGTTGAGGGAAAACAGGTTTGTAAACAAGGTCTCACGCTATCAAAGG
CGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGACCGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACCGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
45.669 |
100 |
0.46 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
45.767 |
100 |
0.458 |