Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   BACIH_RS08800 Genome accession   NZ_CP044360
Coordinates   1774573..1775193 (-) Length   206 a.a.
NCBI ID   WP_012117646.1    Uniprot ID   A7Z552
Organism   Bacillus amyloliquefaciens strain V167     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1769573..1780193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS08770 (BACIH_1783) - 1770435..1770869 (+) 435 WP_003154017.1 dUTP diphosphatase -
  BACIH_RS08775 (BACIH_1784) - 1770958..1771065 (-) 108 Protein_1691 DUF4177 domain-containing protein -
  BACIH_RS08780 (BACIH_1785) - 1771279..1772100 (+) 822 WP_012117644.1 poly-gamma-glutamate hydrolase family protein -
  BACIH_RS19605 (BACIH_1786) - 1772209..1772358 (+) 150 WP_007410334.1 hypothetical protein -
  BACIH_RS08785 (BACIH_1787) - 1772391..1773176 (+) 786 WP_014305064.1 prohibitin family protein -
  BACIH_RS08790 (BACIH_1788) - 1773204..1773653 (-) 450 WP_012117645.1 YndM family protein -
  BACIH_RS08795 (BACIH_1789) - 1773807..1774235 (+) 429 WP_003154006.1 hypothetical protein -
  BACIH_RS08800 (BACIH_1790) dinR/lexA 1774573..1775193 (-) 621 WP_012117646.1 transcriptional repressor LexA Regulator
  BACIH_RS08805 (BACIH_1791) yneA 1775350..1775661 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  BACIH_RS08810 (BACIH_1792) - 1775677..1776327 (+) 651 WP_003153998.1 recombinase family protein -
  BACIH_RS08815 (BACIH_1793) - 1776396..1776629 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  BACIH_RS08820 (BACIH_1794) recP/tkt 1776796..1778799 (+) 2004 WP_007611727.1 transketolase Machinery gene
  BACIH_RS08825 (BACIH_1795) sirA 1778951..1779397 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  BACIH_RS08830 (BACIH_1796) - 1779483..1779701 (+) 219 WP_003153994.1 YneF family protein -
  BACIH_RS08835 (BACIH_1797) - 1779775..1779948 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23076.66 Da        Isoelectric Point: 5.1645

>NTDB_id=342272 BACIH_RS08800 WP_012117646.1 1774573..1775193(-) (dinR/lexA) [Bacillus amyloliquefaciens strain V167]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVQIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=342272 BACIH_RS08800 WP_012117646.1 1774573..1775193(-) (dinR/lexA) [Bacillus amyloliquefaciens strain V167]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCAACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCAAATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAAAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGGACCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z552

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

93.204

100

0.932

Multiple sequence alignment