Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BACIH_RS00155 Genome accession   NZ_CP044360
Coordinates   24707..24937 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain V167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19707..29937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS00125 (BACIH_0025) ridA 19895..20275 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BACIH_RS00130 (BACIH_0026) spoVG 20471..20764 (+) 294 WP_004264660.1 septation regulator SpoVG -
  BACIH_RS00135 (BACIH_0027) glmU 20956..22326 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BACIH_RS00140 (BACIH_0028) - 22348..23301 (+) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  BACIH_RS00145 (BACIH_0029) - 23386..23994 (+) 609 WP_011996173.1 50S ribosomal protein L25/general stress protein Ctc -
  BACIH_RS00150 (BACIH_0030) pth 24079..24645 (+) 567 WP_011996174.1 aminoacyl-tRNA hydrolase -
  BACIH_RS00155 (BACIH_0031) subA/fin 24707..24937 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  BACIH_RS00160 (BACIH_0032) mfd 25007..28540 (+) 3534 WP_007409931.1 transcription-repair coupling factor -
  BACIH_RS00165 (BACIH_0033) spoVT 28677..29213 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=342203 BACIH_RS00155 WP_004264650.1 24707..24937(+) (subA/fin) [Bacillus amyloliquefaciens strain V167]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=342203 BACIH_RS00155 WP_004264650.1 24707..24937(+) (subA/fin) [Bacillus amyloliquefaciens strain V167]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868