Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   F7G16_RS03840 Genome accession   NZ_CP044352
Coordinates   902253..902639 (-) Length   128 a.a.
NCBI ID   WP_004083584.1    Uniprot ID   B2I7W3
Organism   Xylella fastidiosa strain ATCC 35879     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897253..907639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7G16_RS03820 (F7G16_04005) - 897534..897911 (+) 378 WP_004083588.1 DUF4124 domain-containing protein -
  F7G16_RS03825 (F7G16_04010) - 897996..899690 (+) 1695 WP_038233155.1 proline--tRNA ligase -
  F7G16_RS03830 (F7G16_04020) - 899834..900196 (+) 363 Protein_729 H-NS family nucleoid-associated regulatory protein -
  F7G16_RS03835 (F7G16_04025) - 901307..901657 (+) 351 WP_004083585.1 DMT family protein -
  F7G16_RS03840 (F7G16_04030) pilH 902253..902639 (-) 387 WP_004083584.1 twitching motility response regulator PilH Machinery gene
  F7G16_RS03845 (F7G16_04035) - 902732..903736 (-) 1005 WP_004089790.1 oxidoreductase -
  F7G16_RS03850 (F7G16_04040) hflK 903881..905020 (+) 1140 WP_004089789.1 FtsH protease activity modulator HflK -
  F7G16_RS03855 (F7G16_04045) - 905017..905880 (+) 864 WP_004089788.1 protease modulator HflC -
  F7G16_RS03860 (F7G16_04050) - 906040..906225 (+) 186 WP_004089787.1 DUF2065 family protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14261.45 Da        Isoelectric Point: 6.7299

>NTDB_id=342162 F7G16_RS03840 WP_004083584.1 902253..902639(-) (pilH) [Xylella fastidiosa strain ATCC 35879]
MARILIVEDSPSQLLSIQRIVEKLGHETITATDGNTGVEAAKAHLPDLVLMDVVMPKINGFQATRTLKREPATQHVPVVL
VTTKDQDTDRLWGIRQGARAYITKPFSESELLEVMERIFSQPKAKANE

Nucleotide


Download         Length: 387 bp        

>NTDB_id=342162 F7G16_RS03840 WP_004083584.1 902253..902639(-) (pilH) [Xylella fastidiosa strain ATCC 35879]
ATGGCACGCATTTTGATCGTCGAGGACTCACCGTCACAATTACTCAGCATCCAGAGAATCGTCGAGAAACTAGGGCACGA
AACAATTACCGCAACCGATGGCAACACCGGGGTAGAGGCAGCCAAAGCACATTTACCTGATCTGGTACTGATGGACGTGG
TCATGCCTAAAATTAATGGGTTTCAAGCCACACGCACACTCAAGCGCGAACCAGCAACGCAACATGTACCAGTCGTCCTG
GTAACCACCAAGGACCAAGACACTGATCGGCTATGGGGCATACGCCAGGGCGCGCGCGCCTACATCACCAAGCCTTTCTC
AGAGAGTGAATTGCTAGAAGTCATGGAAAGAATATTCAGCCAACCAAAAGCAAAAGCGAACGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I7W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

41.176

92.969

0.383

Multiple sequence alignment