Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   F7D02_RS25305 Genome accession   NZ_CP044315
Coordinates   5041548..5042216 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain SJ7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5036548..5047216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D02_RS25275 (F7D02_25860) yicC 5036567..5037430 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  F7D02_RS25280 (F7D02_25865) rph 5037557..5038273 (+) 717 WP_001247093.1 ribonuclease PH -
  F7D02_RS25285 (F7D02_25870) pyrE 5038339..5038980 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  F7D02_RS25290 (F7D02_25875) slmA 5039017..5039613 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  F7D02_RS25295 (F7D02_25880) dut 5039720..5040178 (-) 459 WP_000976074.1 dUTP diphosphatase -
  F7D02_RS25300 (F7D02_25885) coaBC 5040156..5041376 (-) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  F7D02_RS25305 (F7D02_25890) radC 5041548..5042216 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  F7D02_RS25310 (F7D02_25895) rpmB 5042433..5042669 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  F7D02_RS25315 (F7D02_25900) rpmG 5042690..5042857 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  F7D02_RS25320 (F7D02_25905) mutM 5042955..5043764 (+) 810 WP_001114546.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  F7D02_RS25325 (F7D02_25910) coaD 5043803..5044282 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  F7D02_RS25330 (F7D02_25915) waaA 5044290..5045567 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  F7D02_RS25335 (F7D02_25920) rfaQ 5045980..5047038 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=342134 F7D02_RS25305 WP_001298959.1 5041548..5042216(+) (radC) [Escherichia coli strain SJ7]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=342134 F7D02_RS25305 WP_001298959.1 5041548..5042216(+) (radC) [Escherichia coli strain SJ7]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment