Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F7D02_RS01880 Genome accession   NZ_CP044315
Coordinates   392275..392790 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain SJ7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 387275..397790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D02_RS01835 (F7D02_01930) csrA 387862..388047 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  F7D02_RS01865 (F7D02_01960) yqaB 389505..390071 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F7D02_RS01870 (F7D02_01965) yqaA 390068..390496 (+) 429 WP_001287454.1 YqaA family protein -
  F7D02_RS01875 (F7D02_01970) gshA 390569..392125 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  F7D02_RS01880 (F7D02_01975) luxS 392275..392790 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  F7D02_RS01885 (F7D02_01980) emrB 392854..394392 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  F7D02_RS01890 (F7D02_01985) emrA 394409..395581 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F7D02_RS01895 (F7D02_01990) emrR 395708..396238 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F7D02_RS01900 (F7D02_01995) ygaH 396329..396664 (-) 336 WP_000119754.1 L-valine transporter subunit YgaH -
  F7D02_RS01905 (F7D02_02000) ygaZ 396654..397391 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=342072 F7D02_RS01880 WP_001130210.1 392275..392790(+) (luxS) [Escherichia coli strain SJ7]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=342072 F7D02_RS01880 WP_001130210.1 392275..392790(+) (luxS) [Escherichia coli strain SJ7]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737