Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SALIVB_RS05065 Genome accession   NC_015760
Coordinates   1132670..1133740 (-) Length   356 a.a.
NCBI ID   WP_013990605.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127670..1138740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS05050 (SALIVB_1039) pstB 1128391..1129149 (+) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -
  SALIVB_RS05055 (SALIVB_1040) phoU 1129178..1129831 (+) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  SALIVB_RS05060 (SALIVB_1041) - 1129965..1132505 (+) 2541 WP_013990604.1 M1 family metallopeptidase -
  SALIVB_RS05065 (SALIVB_1042) xerS 1132670..1133740 (-) 1071 WP_013990605.1 tyrosine recombinase XerS Machinery gene
  SALIVB_RS05070 (SALIVB_1043) - 1133996..1134985 (-) 990 WP_002885026.1 lipoate--protein ligase -
  SALIVB_RS10540 (SALIVB_1044) - 1135109..1136236 (+) 1128 WP_013990606.1 hypothetical protein -
  SALIVB_RS05085 (SALIVB_1045) glgP 1136346..1138607 (-) 2262 WP_013990607.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41446.55 Da        Isoelectric Point: 9.4644

>NTDB_id=34207 SALIVB_RS05065 WP_013990605.1 1132670..1133740(-) (xerS) [Streptococcus salivarius CCHSS3]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAHDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLENYLSIRDKRYKAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=34207 SALIVB_RS05065 WP_013990605.1 1132670..1133740(-) (xerS) [Streptococcus salivarius CCHSS3]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTAATGCCGTGGTTTGTCTTGGAGTATTATCAGTC
TAAACTATCGGTACCGTATTCTTTTACGACATTATACGAATATCTTAAGGAATATAAACGTTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTCATGATATTGCCTCGATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTGCTTTATCTACGTGAACGACCATCTTTAAATACCTATTCCAAGAAACAGGGAGTTTCTCAAACAACCATTAA
CCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGTCCTGACGGTGAGCCATATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAGCAGAAA
CTCTTTCTAGGCGATGAAACCATGGAATTTCTTGATTATGTCGAAAATGAATACGAAGTTAAGCTCTCAAATCGCGCAAA
ATCTTCGTTTTACAAGAATAAAGAACGTGATTTAGCGATAATAGCCTTGCTACTGGCTTCAGGGGTTCGACTTTCTGAGG
CTGTTAACCTGGACCTTAAAGATATCAATCTGAAAATGATGGTCATTGACGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCTTATCTTGAGAATTATCTTAGTATACGTGATAAACGTTATAAGGCTGAAAAGCA
AGACCTTGCCCTATTTTTAACGGAATATCGAGGTGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACATACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGCCACCAACTTGGCCATGCTTCCACTCAGGTCACTGATCTTTATACTCATATCGTCAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment