Detailed information NTG0342069

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F7D02_RS01575
• Genome accession: NZ_CP044315
• Coordinates: 335037..335981 (+)
• Length: 314 a.a.
• NCBI ID: WP_000081548.1
• Uniprot ID: -
• Organism: Escherichia coli strain SJ7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 330037..340981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7D02_RS01545 (F7D02_01635)	ispD	330098..330808 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F7D02_RS01550 (F7D02_01640)	ispF	330808..331287 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F7D02_RS01555 (F7D02_01645)	truD	331284..332333 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
F7D02_RS01560 (F7D02_01650)	surE	332314..333075 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F7D02_RS01565 (F7D02_01655)	pcm	333069..333695 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F7D02_RS01570 (F7D02_01660)	nlpD	333880..334974 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
F7D02_RS01575 (F7D02_01665)	rpoS	335037..335981 (+)	945	WP_000081548.1	RNA polymerase sigma factor RpoS	Regulator
F7D02_RS01580 (F7D02_01670)	-	336150..336557 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
F7D02_RS01585 (F7D02_01675)	-	336704..337297 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
F7D02_RS01590 (F7D02_01680)	-	337297..338724 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
F7D02_RS01595 (F7D02_01685)	-	338735..338989 (+)	255	WP_000562978.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
F7D02_RS01600 (F7D02_01690)	ygbN	339028..340392 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36116.74 Da
• Isoelectric Point: 4.6098

>NTDB_id=342069 F7D02_RS01575 WP_000081548.1 335037..335981(+) (rpoS) [Escherichia coli strain SJ7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR

Nucleotide

• Length: 945 bp

>NTDB_id=342069 F7D02_RS01575 WP_000081548.1 335037..335981(+) (rpoS) [Escherichia coli strain SJ7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGCGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-314)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.816	98.408	0.717