Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | F7D03_RS13485 | Genome accession | NZ_CP044314 |
| Coordinates | 2775157..2775597 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360902.1 | Uniprot ID | A7ZHJ7 |
| Organism | Escherichia coli strain RM9245 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2770157..2780597
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7D03_RS13465 (F7D03_13465) | coaE | 2770647..2771267 (-) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
| F7D03_RS25550 | - | 2771292..2771336 (+) | 45 | WP_120795372.1 | protein YacM | - |
| F7D03_RS13470 (F7D03_13470) | guaC | 2771492..2772535 (+) | 1044 | WP_001217338.1 | GMP reductase | - |
| F7D03_RS13475 (F7D03_13475) | hofC | 2772570..2773772 (-) | 1203 | WP_000157234.1 | protein transport protein HofC | - |
| F7D03_RS13480 (F7D03_13480) | pilB | 2773762..2775147 (-) | 1386 | WP_001025155.1 | type II secretion system protein GspE | Machinery gene |
| F7D03_RS13485 (F7D03_13485) | pilA | 2775157..2775597 (-) | 441 | WP_000360902.1 | prepilin peptidase-dependent pilin | Machinery gene |
| F7D03_RS13490 (F7D03_13490) | nadC | 2775800..2776693 (-) | 894 | WP_001135168.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| F7D03_RS13495 (F7D03_13495) | ampD | 2776781..2777332 (+) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| F7D03_RS13500 (F7D03_13500) | ampE | 2777329..2778183 (+) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| F7D03_RS13505 (F7D03_13505) | aroP | 2778226..2779599 (-) | 1374 | WP_000969914.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15630.76 Da Isoelectric Point: 4.5559
>NTDB_id=342040 F7D03_RS13485 WP_000360902.1 2775157..2775597(-) (pilA) [Escherichia coli strain RM9245]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALHQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALHQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=342040 F7D03_RS13485 WP_000360902.1 2775157..2775597(-) (pilA) [Escherichia coli strain RM9245]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCATC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCATC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
41.791 |
91.781 |
0.384 |
| pilA | Haemophilus influenzae Rd KW20 |
41.045 |
91.781 |
0.377 |