Detailed information NTG0341996

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F7D03_RS03655
• Genome accession: NZ_CP044314
• Coordinates: 741640..742632 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM9245
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 736640..747632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7D03_RS03630 (F7D03_03630)	ygbN	737295..738659 (+)	1365	WP_000104439.1	GntP family transporter	-
F7D03_RS03635 (F7D03_03635)	-	738698..738934 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
F7D03_RS03640 (F7D03_03640)	-	738945..740372 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
F7D03_RS03645 (F7D03_03645)	-	740372..740965 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
F7D03_RS03650 (F7D03_03650)	-	741112..741519 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
F7D03_RS03655 (F7D03_03655)	rpoS	741640..742632 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F7D03_RS03660 (F7D03_03660)	nlpD	742695..743789 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
F7D03_RS03665 (F7D03_03665)	pcm	743974..744600 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F7D03_RS03670 (F7D03_03670)	surE	744594..745355 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F7D03_RS03675 (F7D03_03675)	truD	745336..746385 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
F7D03_RS03680 (F7D03_03680)	ispF	746382..746861 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F7D03_RS03685 (F7D03_03685)	ispD	746861..747571 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=341996 F7D03_RS03655 WP_000081550.1 741640..742632(-) (rpoS) [Escherichia coli strain RM9245]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=341996 F7D03_RS03655 WP_000081550.1 741640..742632(-) (rpoS) [Escherichia coli strain RM9245]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715