Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ETT54_RS08880 Genome accession   NZ_CP035445
Coordinates   48243..48341 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm92     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 43243..53341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT54_RS00255 (ETT54_00255) - 44103..45800 (+) 1698 WP_136098268.1 AIPR family protein -
  ETT54_RS00260 (ETT54_00260) purB 45818..47110 (+) 1293 WP_129321630.1 adenylosuccinate lyase -
  ETT54_RS00265 (ETT54_00265) comR 47241..48152 (+) 912 WP_020904818.1 XRE family transcriptional regulator Regulator
  ETT54_RS08880 comS 48243..48341 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  ETT54_RS00270 (ETT54_00270) ruvB 48372..49370 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  ETT54_RS00275 (ETT54_00275) - 49508..49945 (+) 438 WP_111689441.1 low molecular weight protein-tyrosine-phosphatase -
  ETT54_RS00280 (ETT54_00280) - 49968..50369 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  ETT54_RS00285 (ETT54_00285) - 50366..52141 (+) 1776 WP_053308140.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=341994 ETT54_RS08880 WP_020833188.1 48243..48341(+) (comS) [Streptococcus pyogenes strain emm92]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=341994 ETT54_RS08880 WP_020833188.1 48243..48341(+) (comS) [Streptococcus pyogenes strain emm92]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment