Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   SALIVB_RS03780 Genome accession   NC_015760
Coordinates   864080..864745 (+) Length   221 a.a.
NCBI ID   WP_002885228.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 859080..869745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS03760 (SALIVB_0770) - 859609..860586 (+) 978 WP_041817203.1 sensor histidine kinase -
  SALIVB_RS03765 (SALIVB_0771) - 860728..861486 (+) 759 WP_013990396.1 ABC transporter ATP-binding protein -
  SALIVB_RS03770 (SALIVB_0772) - 861488..863488 (+) 2001 WP_013990397.1 ABC transporter permease -
  SALIVB_RS03775 (SALIVB_0773) - 863573..864067 (+) 495 WP_002885314.1 YkgJ family cysteine cluster protein -
  SALIVB_RS03780 (SALIVB_0774) hdrM 864080..864745 (+) 666 WP_002885228.1 hypothetical protein Regulator
  SALIVB_RS03785 (SALIVB_0775) - 864883..865560 (+) 678 WP_013990398.1 hypothetical protein -
  SALIVB_RS03790 (SALIVB_0776) - 865627..866508 (+) 882 WP_013990399.1 ABC transporter ATP-binding protein -
  SALIVB_RS03795 (SALIVB_0777) - 866505..867242 (+) 738 WP_013990400.1 ABC transporter permease -
  SALIVB_RS03800 (SALIVB_0778) - 867253..867702 (+) 450 WP_013990401.1 cytidine deaminase family protein -
  SALIVB_RS03805 (SALIVB_0779) - 867846..868781 (+) 936 WP_013990402.1 bile acid:sodium symporter family protein -
  SALIVB_RS03815 (SALIVB_0780) - 869213..869422 (+) 210 WP_013990403.1 hypothetical protein -
  SALIVB_RS03820 (SALIVB_0781) - 869433..869612 (+) 180 WP_002885306.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25083.20 Da        Isoelectric Point: 9.7598

>NTDB_id=34199 SALIVB_RS03780 WP_002885228.1 864080..864745(+) (hdrM) [Streptococcus salivarius CCHSS3]
MKRFNAGVITLLIIAAYFIATAFIPDLYLAFNYKLILALLFVLLSWQSKGKFLFFLGMAFLSTYIHDLFRLDYSEWTLFV
GILILGIAVDRLSKPSYKKKFSYKVSKEHEREIFAKTLFSESVQVVTSQNLETVYANADFGRLTLDLRQAQFMTDRPQIV
VQANFSQVIIRVPKDWQVDTHGLHTSLAGVKGYDSLGERELSSTTVSLTGSVSFGQVTIKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=34199 SALIVB_RS03780 WP_002885228.1 864080..864745(+) (hdrM) [Streptococcus salivarius CCHSS3]
ATGAAACGCTTTAATGCAGGTGTTATTACCTTACTTATCATTGCTGCCTATTTTATCGCAACAGCTTTTATTCCAGATTT
GTATTTGGCTTTTAATTATAAGTTGATTTTAGCCTTGCTTTTTGTGCTTTTGAGCTGGCAATCTAAGGGGAAATTTCTCT
TTTTCTTGGGGATGGCTTTTCTGTCGACCTATATCCATGACCTATTCAGATTGGACTATTCAGAATGGACACTCTTTGTA
GGGATTCTTATCTTGGGGATTGCAGTGGACCGTTTGAGCAAGCCAAGTTATAAGAAAAAATTCTCTTACAAGGTGTCTAA
AGAACATGAGCGAGAAATTTTTGCTAAGACTCTTTTTTCAGAGTCTGTGCAAGTGGTGACTTCTCAAAACCTCGAAACTG
TCTATGCCAATGCTGATTTTGGACGTTTGACCTTGGATTTGCGTCAGGCGCAGTTTATGACGGACCGACCTCAGATTGTT
GTTCAGGCAAATTTTTCTCAGGTTATCATTCGAGTACCTAAGGATTGGCAAGTGGATACACACGGGCTTCATACAAGCCT
AGCAGGAGTGAAAGGCTATGATAGTCTAGGAGAGCGAGAGTTATCAAGCACTACAGTTTCTCTAACAGGATCTGTATCCT
TTGGACAGGTAACTATCAAACATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

37.037

97.738

0.362

Multiple sequence alignment