Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F7D04_RS23215 Genome accession   NZ_CP044313
Coordinates   4713311..4713916 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain RM11911     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4708311..4718916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D04_RS27770 - 4708865..4708963 (+) 99 Protein_4591 hypothetical protein -
  F7D04_RS23185 rsmS 4709016..4709177 (-) 162 WP_001460555.1 pleiotropic regulatory protein RsmS -
  F7D04_RS23190 priC 4709191..4709718 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  F7D04_RS23195 ybaN 4709788..4710165 (+) 378 WP_001188905.1 DUF454 family protein -
  F7D04_RS23200 apt 4710318..4710869 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  F7D04_RS23205 dnaX 4710998..4712929 (+) 1932 WP_050938760.1 DNA polymerase III subunit gamma/tau -
  F7D04_RS23210 ybaB 4712982..4713311 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  F7D04_RS23215 recR 4713311..4713916 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  F7D04_RS23220 htpG 4714026..4715900 (+) 1875 WP_001704251.1 molecular chaperone HtpG -
  F7D04_RS23225 adk 4716081..4716725 (+) 645 WP_001220233.1 adenylate kinase -
  F7D04_RS23230 hemH 4716857..4717819 (+) 963 WP_001250088.1 ferrochelatase -
  F7D04_RS23235 aes 4717816..4718775 (-) 960 WP_050938759.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=341978 F7D04_RS23215 WP_001195025.1 4713311..4713916(+) (recR) [Escherichia coli strain RM11911]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=341978 F7D04_RS23215 WP_001195025.1 4713311..4713916(+) (recR) [Escherichia coli strain RM11911]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment