Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   SALIVB_RS03305 Genome accession   NC_015760
Coordinates   751576..752274 (-) Length   232 a.a.
NCBI ID   WP_013990307.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 746576..757274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS10365 (SALIVB_0662) - 746619..746930 (+) 312 WP_013990300.1 hypothetical protein -
  SALIVB_RS03285 (SALIVB_0666) - 747364..748076 (+) 713 Protein_595 IS110 family transposase -
  SALIVB_RS03290 (SALIVB_0667) - 748200..749449 (+) 1250 Protein_596 ISL3 family transposase -
  SALIVB_RS03295 - 749492..749986 (+) 495 Protein_597 transposase -
  SALIVB_RS03300 (SALIVB_0669) - 750197..751564 (-) 1368 WP_013990306.1 sensor histidine kinase -
  SALIVB_RS03305 (SALIVB_0670) scnR 751576..752274 (-) 699 WP_013990307.1 response regulator transcription factor Regulator
  SALIVB_RS03310 (SALIVB_0671) - 752472..752642 (+) 171 WP_013990308.1 lacticin 481 family lantibiotic -
  SALIVB_RS03315 (SALIVB_0672) sivM 752810..755593 (+) 2784 WP_013990309.1 salivaricin 9 biosynthesis lanthionine synthetase SivM -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26376.57 Da        Isoelectric Point: 5.0139

>NTDB_id=34196 SALIVB_RS03305 WP_013990307.1 751576..752274(-) (scnR) [Streptococcus salivarius CCHSS3]
MDIEAPFLARKILVVDDDVALNHSIREILSVSGFSKIYSAYSISEGIESFVKNSIDLIILDVMLPDGEGYLLSKYVRKES
DIPILFLTAKNEPEDEIQGLQSGGDDFITKPFLPKILIYRTISLLRRSYKEDSNTIKLDHCIINLGNAIVEKDNEKLSLT
PIEIQIIRKLYDNKNYIVSTEAICDTVWGIDSFGYEKSLMVHIRNIREKIELNPSKPQYLVTVKGLGYKLMV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=34196 SALIVB_RS03305 WP_013990307.1 751576..752274(-) (scnR) [Streptococcus salivarius CCHSS3]
ATGGATATCGAAGCGCCTTTTTTGGCTAGGAAAATATTGGTTGTTGATGATGATGTTGCGTTAAATCATTCAATAAGGGA
GATACTGTCAGTTTCTGGTTTCTCAAAAATATATAGTGCATACAGCATCAGTGAAGGAATAGAGTCTTTTGTTAAAAATT
CTATTGATTTGATTATATTAGATGTCATGCTTCCTGACGGGGAAGGGTATTTATTATCAAAATATGTTAGAAAAGAATCT
GATATTCCAATTCTTTTTCTAACAGCAAAAAATGAACCTGAAGATGAAATTCAAGGTCTACAATCTGGAGGAGATGATTT
TATAACTAAGCCTTTCCTACCTAAAATTCTCATTTATCGTACGATTTCGCTTCTTCGGCGATCGTACAAAGAAGACAGTA
ATACTATTAAATTAGATCATTGTATTATTAATTTAGGGAATGCAATTGTTGAAAAAGATAATGAAAAATTATCTTTAACC
CCAATAGAAATTCAAATCATTCGAAAATTGTATGATAATAAAAACTATATTGTATCTACAGAAGCGATTTGTGATACAGT
ATGGGGTATTGATAGCTTTGGATATGAAAAATCTTTAATGGTTCATATTAGAAATATCAGAGAAAAAATCGAACTTAATC
CTTCAAAGCCACAATACTTGGTTACTGTTAAAGGACTTGGCTACAAACTAATGGTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

44.843

96.121

0.431

Multiple sequence alignment