Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F7D04_RS10385 Genome accession   NZ_CP044313
Coordinates   2064226..2064741 (-) Length   171 a.a.
NCBI ID   WP_050939284.1    Uniprot ID   -
Organism   Escherichia coli strain RM11911     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2059226..2069741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D04_RS10360 ygaZ 2059625..2060362 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  F7D04_RS10365 ygaH 2060352..2060687 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  F7D04_RS10370 emrR 2060778..2061308 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F7D04_RS10375 emrA 2061435..2062607 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F7D04_RS10380 emrB 2062624..2064162 (+) 1539 WP_050939282.1 multidrug efflux MFS transporter permease subunit EmrB -
  F7D04_RS10385 luxS 2064226..2064741 (-) 516 WP_050939284.1 S-ribosylhomocysteine lyase Regulator
  F7D04_RS10390 gshA 2064891..2066447 (-) 1557 WP_000611800.1 glutamate--cysteine ligase -
  F7D04_RS10395 yqaA 2066520..2066948 (-) 429 WP_001287457.1 YqaA family protein -
  F7D04_RS10400 yqaB 2066945..2067511 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F7D04_RS10425 csrA 2068830..2069015 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19431.16 Da        Isoelectric Point: 4.7556

>NTDB_id=341928 F7D04_RS10385 WP_050939284.1 2064226..2064741(-) (luxS) [Escherichia coli strain RM11911]
MPLLDSFTIDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=341928 F7D04_RS10385 WP_050939284.1 2064226..2064741(-) (luxS) [Escherichia coli strain RM11911]
ATGCCGTTGTTAGATAGCTTCACAATCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731