Detailed information NTG0341872

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F7D05_RS18175
• Genome accession: NZ_CP044312
• Coordinates: 3701860..3702852 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM13745
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3696860..3707852

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7D05_RS18155 (F7D05_18475)	otnK	3697635..3698897 (+)	1263	WP_000590397.1	3-oxo-tetronate kinase	-
F7D05_RS18160 (F7D05_18480)	ygbL	3698894..3699532 (+)	639	WP_001278994.1	aldolase	-
F7D05_RS18165 (F7D05_18485)	ygbM	3699537..3700313 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
F7D05_RS18170 (F7D05_18490)	ygbN	3700402..3701766 (+)	1365	WP_000104429.1	GntP family transporter	-
F7D05_RS18175 (F7D05_18495)	rpoS	3701860..3702852 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F7D05_RS18180 (F7D05_18500)	nlpD	3702915..3704009 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
F7D05_RS18185 (F7D05_18505)	pcm	3704194..3704820 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F7D05_RS18190 (F7D05_18510)	surE	3704814..3705575 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F7D05_RS18195 (F7D05_18515)	truD	3705556..3706605 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
F7D05_RS18200 (F7D05_18520)	ispF	3706602..3707081 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F7D05_RS18205 (F7D05_18525)	ispD	3707081..3707791 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=341872 F7D05_RS18175 WP_000081550.1 3701860..3702852(-) (rpoS) [Escherichia coli strain RM13745]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=341872 F7D05_RS18175 WP_000081550.1 3701860..3702852(-) (rpoS) [Escherichia coli strain RM13745]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715