Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F7D05_RS17890 Genome accession   NZ_CP044312
Coordinates   3647840..3648355 (-) Length   171 a.a.
NCBI ID   WP_050939284.1    Uniprot ID   -
Organism   Escherichia coli strain RM13745     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3642840..3653355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D05_RS17865 (F7D05_18180) ygaZ 3643239..3643976 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  F7D05_RS17870 (F7D05_18185) ygaH 3643966..3644301 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  F7D05_RS17875 (F7D05_18190) emrR 3644392..3644922 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F7D05_RS17880 (F7D05_18195) emrA 3645049..3646221 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F7D05_RS17885 (F7D05_18200) emrB 3646238..3647776 (+) 1539 WP_050939282.1 multidrug efflux MFS transporter permease subunit EmrB -
  F7D05_RS17890 (F7D05_18205) luxS 3647840..3648355 (-) 516 WP_050939284.1 S-ribosylhomocysteine lyase Regulator
  F7D05_RS17895 (F7D05_18210) gshA 3648505..3650061 (-) 1557 WP_000611800.1 glutamate--cysteine ligase -
  F7D05_RS17900 (F7D05_18215) yqaA 3650134..3650562 (-) 429 WP_001287457.1 YqaA family protein -
  F7D05_RS17905 (F7D05_18220) yqaB 3650559..3651125 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F7D05_RS17930 (F7D05_18245) csrA 3652444..3652629 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19431.16 Da        Isoelectric Point: 4.7556

>NTDB_id=341869 F7D05_RS17890 WP_050939284.1 3647840..3648355(-) (luxS) [Escherichia coli strain RM13745]
MPLLDSFTIDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=341869 F7D05_RS17890 WP_050939284.1 3647840..3648355(-) (luxS) [Escherichia coli strain RM13745]
ATGCCGTTGTTAGATAGCTTCACAATCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731