Detailed information NTG0341775

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F7D06_RS13400
• Genome accession: NZ_CP044311
• Coordinates: 2705351..2706343 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM13752
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2700351..2711343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7D06_RS13370 (F7D06_13600)	ispD	2700412..2701122 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F7D06_RS13375 (F7D06_13605)	ispF	2701122..2701601 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F7D06_RS13380 (F7D06_13610)	truD	2701598..2702647 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
F7D06_RS13385 (F7D06_13615)	surE	2702628..2703389 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F7D06_RS13390 (F7D06_13620)	pcm	2703383..2704009 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F7D06_RS13395 (F7D06_13625)	nlpD	2704194..2705288 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
F7D06_RS13400 (F7D06_13630)	rpoS	2705351..2706343 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F7D06_RS13405 (F7D06_13635)	ygbN	2706437..2707801 (-)	1365	WP_000104429.1	GntP family transporter	-
F7D06_RS13410 (F7D06_13640)	ygbM	2707890..2708666 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
F7D06_RS13415 (F7D06_13645)	ygbL	2708671..2709309 (-)	639	WP_001278994.1	aldolase	-
F7D06_RS13420 (F7D06_13650)	otnK	2709306..2710568 (-)	1263	WP_000590397.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=341775 F7D06_RS13400 WP_000081550.1 2705351..2706343(+) (rpoS) [Escherichia coli strain RM13752]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=341775 F7D06_RS13400 WP_000081550.1 2705351..2706343(+) (rpoS) [Escherichia coli strain RM13752]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715