Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F6P95_RS16885 Genome accession   NZ_CP044293
Coordinates   3500248..3500853 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain P276M     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3495248..3505853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6P95_RS16855 (F6P95_17025) rsmS 3495953..3496114 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  F6P95_RS16860 (F6P95_17030) priC 3496128..3496655 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  F6P95_RS16865 (F6P95_17035) ybaN 3496725..3497102 (+) 378 WP_001188905.1 DUF454 family protein -
  F6P95_RS16870 (F6P95_17040) apt 3497255..3497806 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  F6P95_RS16875 (F6P95_17045) dnaX 3497935..3499866 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  F6P95_RS16880 (F6P95_17050) ybaB 3499919..3500248 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  F6P95_RS16885 (F6P95_17055) recR 3500248..3500853 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  F6P95_RS16890 (F6P95_17060) htpG 3500963..3502837 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  F6P95_RS16895 (F6P95_17065) adk 3503018..3503662 (+) 645 WP_001220233.1 adenylate kinase -
  F6P95_RS16900 (F6P95_17075) hemH 3503898..3504860 (+) 963 WP_001250088.1 ferrochelatase -
  F6P95_RS16905 (F6P95_17080) aes 3504857..3505816 (-) 960 WP_000801850.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=341735 F6P95_RS16885 WP_001195025.1 3500248..3500853(+) (recR) [Escherichia coli strain P276M]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=341735 F6P95_RS16885 WP_001195025.1 3500248..3500853(+) (recR) [Escherichia coli strain P276M]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment