Detailed information NTG0341691

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F6P95_RS06180
• Genome accession: NZ_CP044293
• Coordinates: 1242075..1243067 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain P276M
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1237075..1248067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6P95_RS06160 (F6P95_06240)	otnK	1237850..1239112 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
F6P95_RS06165 (F6P95_06245)	ygbL	1239109..1239747 (+)	639	WP_001278994.1	aldolase	-
F6P95_RS06170 (F6P95_06250)	ygbM	1239752..1240528 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
F6P95_RS06175 (F6P95_06255)	ygbN	1240617..1241981 (+)	1365	WP_000104441.1	GntP family transporter	-
F6P95_RS06180 (F6P95_06260)	rpoS	1242075..1243067 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F6P95_RS06185 (F6P95_06265)	nlpD	1243130..1244176 (-)	1047	WP_306308696.1	murein hydrolase activator NlpD	-
F6P95_RS06190 (F6P95_06270)	pcm	1244361..1244987 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F6P95_RS06195 (F6P95_06275)	surE	1244981..1245742 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F6P95_RS06200 (F6P95_06280)	truD	1245723..1246772 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
F6P95_RS06205 (F6P95_06285)	ispF	1246769..1247248 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F6P95_RS06210 (F6P95_06290)	ispD	1247248..1247958 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=341691 F6P95_RS06180 WP_000081550.1 1242075..1243067(-) (rpoS) [Escherichia coli strain P276M]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=341691 F6P95_RS06180 WP_000081550.1 1242075..1243067(-) (rpoS) [Escherichia coli strain P276M]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715