Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F6P95_RS02710 Genome accession   NZ_CP044293
Coordinates   507951..509375 (+) Length   474 a.a.
NCBI ID   WP_157716834.1    Uniprot ID   -
Organism   Escherichia coli strain P276M     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 502951..514375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6P95_RS22860 - 503296..503402 (+) 107 Protein_526 antitermination protein N -
  F6P95_RS23310 - 503993..504037 (+) 45 WP_135494149.1 hypothetical protein -
  F6P95_RS22505 - 504264..504434 (+) 171 WP_001183771.1 hypothetical protein -
  F6P95_RS02680 (F6P95_02720) - 504531..505184 (+) 654 WP_250668971.1 DUF550 domain-containing protein -
  F6P95_RS02685 (F6P95_02725) - 505316..505558 (+) 243 WP_000476264.1 hypothetical protein -
  F6P95_RS22510 - 505536..505817 (+) 282 Protein_531 DNA polymerase III subunit theta -
  F6P95_RS02695 (F6P95_02735) - 505907..506074 (+) 168 WP_157716832.1 hypothetical protein -
  F6P95_RS02700 (F6P95_02740) - 506419..506610 (+) 192 WP_157716833.1 AlpA family phage regulatory protein -
  F6P95_RS02705 (F6P95_02745) - 506591..507769 (-) 1179 WP_097451079.1 site-specific integrase -
  F6P95_RS02710 (F6P95_02750) sbcB 507951..509375 (+) 1425 WP_157716834.1 exodeoxyribonuclease I Machinery gene
  F6P95_RS02715 (F6P95_02755) tsuB 509418..509645 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  F6P95_RS02720 (F6P95_02760) tsuA 509659..510717 (-) 1059 WP_157716835.1 thiosulfate utilization transporter TsuA/YeeE -
  F6P95_RS02725 (F6P95_02765) plaP 510896..512254 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  F6P95_RS02730 (F6P95_02770) yoeI 512244..512306 (-) 63 WP_010723108.1 membrane protein YoeI -
  F6P95_RS02735 (F6P95_02775) yeeY 512521..513450 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  F6P95_RS02740 (F6P95_02780) yeeZ 513496..514320 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54412.64 Da        Isoelectric Point: 5.3476

>NTDB_id=341679 F6P95_RS02710 WP_157716834.1 507951..509375(+) (sbcB) [Escherichia coli strain P276M]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
ATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=341679 F6P95_RS02710 WP_157716834.1 507951..509375(+) (sbcB) [Escherichia coli strain P276M]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586