Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F5989_RS04200 Genome accession   NZ_CP044221
Coordinates   869888..870370 (+) Length   160 a.a.
NCBI ID   WP_002263047.1    Uniprot ID   Q8DVK8
Organism   Streptococcus mutans strain NCH105     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 864888..875370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5989_RS04185 (F5989_04240) rpoZ 866716..867033 (-) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -
  F5989_RS04190 (F5989_04245) gmk 867057..867689 (-) 633 WP_002263045.1 guanylate kinase -
  F5989_RS04195 (F5989_04250) - 868136..869743 (-) 1608 WP_002263046.1 ribonuclease Y -
  F5989_RS04200 (F5989_04255) luxS 869888..870370 (+) 483 WP_002263047.1 S-ribosylhomocysteine lyase Regulator
  F5989_RS04205 (F5989_04260) - 870531..872171 (-) 1641 WP_002263048.1 cell division site-positioning protein MapZ family protein -
  F5989_RS04210 (F5989_04265) - 872187..873341 (-) 1155 WP_002266358.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  F5989_RS04220 (F5989_04275) gpsB 873791..874129 (-) 339 WP_002263050.1 cell division regulator GpsB -
  F5989_RS04225 (F5989_04280) - 874235..874756 (-) 522 WP_002267943.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17988.67 Da        Isoelectric Point: 6.1364

>NTDB_id=341599 F5989_RS04200 WP_002263047.1 869888..870370(+) (luxS) [Streptococcus mutans strain NCH105]
MTKEVTVESFELDHIAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=341599 F5989_RS04200 WP_002263047.1 869888..870370(+) (luxS) [Streptococcus mutans strain NCH105]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGATCACATTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.926

93.125

0.362

Multiple sequence alignment