Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SALIVB_RS00210 Genome accession   NC_015760
Coordinates   28465..29238 (+) Length   257 a.a.
NCBI ID   WP_013989884.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23465..34238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS00190 (SALIVB_0035) - 24356..25321 (-) 966 WP_013989881.1 IS3 family transposase -
  SALIVB_RS00195 (SALIVB_0036) - 25318..25995 (-) 678 WP_013989882.1 helix-turn-helix domain-containing protein -
  SALIVB_RS00200 (SALIVB_0037) - 26245..27210 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  SALIVB_RS00205 (SALIVB_0038) - 27303..28478 (+) 1176 WP_013989883.1 pyridoxal phosphate-dependent aminotransferase -
  SALIVB_RS00210 (SALIVB_0039) recO 28465..29238 (+) 774 WP_013989884.1 DNA repair protein RecO Machinery gene
  SALIVB_RS00215 (SALIVB_0040) plsX 29450..30454 (+) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  SALIVB_RS00220 (SALIVB_0041) - 30454..30699 (+) 246 WP_013989886.1 phosphopantetheine-binding protein -
  SALIVB_RS00225 (SALIVB_0042) purC 30958..31665 (+) 708 WP_013989887.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29746.92 Da        Isoelectric Point: 4.8553

>NTDB_id=34152 SALIVB_RS00210 WP_013989884.1 28465..29238(+) (recO) [Streptococcus salivarius CCHSS3]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGAGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITGDIFKLSYATYLAALTDATIADGVTDAQLFVFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSFKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRYFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=34152 SALIVB_RS00210 WP_013989884.1 28465..29238(+) (recO) [Streptococcus salivarius CCHSS3]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAATGATAAACTAGTTAAAATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGGCAGGTAAATTAAGTGCTGTCATTCAACCTTTGACCA
TCGCTGAATTCATGATGACTGTAAATGATGAAGGTCTATCTTTCATAGAAGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAGGCGATATTTTCAAGCTGTCTTATGCGACTTATTTGGCTGCATTGACAGATGCTACTATTGCTGATGGTGTGAC
AGATGCGCAATTATTTGTATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATTTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGCGTACGCTTGAATTTTCACGAGTGTGTCTTTTGTCATCGTGTAGGCCTT
CCTTTTGATTTCTCGTTTAAGTTCTCGGGGTTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTGGA
CCCTAATGTGCCTTATCTTTTAGATCGTTTTCAGGGGCTTTCCTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGATATTTTATCGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGCCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.451

98.444

0.615

Multiple sequence alignment