Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F4V23_RS04545 Genome accession   NZ_CP044175
Coordinates   883179..883754 (+) Length   191 a.a.
NCBI ID   WP_002776257.1    Uniprot ID   A0ABN0EQ59
Organism   Campylobacter coli strain AR-0411     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 878179..888754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS04525 porA 878583..879863 (+) 1281 WP_002818940.1 group 3 major outer membrane porin protein PorA -
  F4V23_RS04530 dnaJ 880000..881124 (-) 1125 WP_002790050.1 molecular chaperone DnaJ -
  F4V23_RS04535 - 881271..881942 (+) 672 WP_002776259.1 response regulator transcription factor -
  F4V23_RS04540 - 881939..883189 (+) 1251 WP_002776258.1 ArsS family sensor histidine kinase -
  F4V23_RS04545 recR 883179..883754 (+) 576 WP_002776257.1 recombination mediator RecR Machinery gene
  F4V23_RS04550 - 883756..884289 (-) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  F4V23_RS04555 cybH 884286..884978 (-) 693 WP_002776254.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  F4V23_RS04560 - 884990..886705 (-) 1716 WP_002776252.1 nickel-dependent hydrogenase large subunit -
  F4V23_RS04565 - 886711..887850 (-) 1140 WP_002776249.1 hydrogenase small subunit -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21732.15 Da        Isoelectric Point: 6.1072

>NTDB_id=341452 F4V23_RS04545 WP_002776257.1 883179..883754(+) (recR) [Campylobacter coli strain AR-0411]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNCLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=341452 F4V23_RS04545 WP_002776257.1 883179..883754(+) (recR) [Campylobacter coli strain AR-0411]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GCTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTGCTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366

Multiple sequence alignment