Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PYCH_RS00125 Genome accession   NC_015680
Coordinates   20548..21309 (-) Length   253 a.a.
NCBI ID   WP_013904794.1    Uniprot ID   F8AFC9
Organism   Pyrococcus yayanosii CH1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 15548..26309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYCH_RS00090 (PYCH_00170) - 16233..16922 (-) 690 WP_048058118.1 TIGR00289 family protein -
  PYCH_RS00095 (PYCH_00180) - 17007..17201 (-) 195 WP_013904789.1 C2H2-type zinc finger protein -
  PYCH_RS00105 (PYCH_00190) - 17451..18209 (+) 759 WP_013904790.1 PfkB family carbohydrate kinase -
  PYCH_RS00110 (PYCH_00200) - 18249..18782 (+) 534 WP_013904791.1 NUDIX hydrolase -
  PYCH_RS00115 (PYCH_00210) - 18755..19105 (+) 351 WP_013904792.1 Mth938-like domain-containing protein -
  PYCH_RS00120 (PYCH_00220) - 19102..20547 (-) 1446 WP_013904793.1 hypothetical protein -
  PYCH_RS00125 (PYCH_00230) pptA 20548..21309 (-) 762 WP_013904794.1 ABC transporter ATP-binding protein Regulator
  PYCH_RS00130 (PYCH_00240) fbp 21632..22756 (+) 1125 WP_013904795.1 fructose-1,6-bisphosphate aldolase/phosphatase -
  PYCH_RS00135 (PYCH_00250) - 22759..24111 (-) 1353 WP_013904796.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  PYCH_RS00140 (PYCH_00260) - 24200..24829 (+) 630 WP_013904797.1 ZPR1 zinc finger domain-containing protein -
  PYCH_RS00145 (PYCH_00270) - 24907..25722 (+) 816 WP_013904798.1 hypothetical protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 27860.43 Da        Isoelectric Point: 4.7856

>NTDB_id=34144 PYCH_RS00125 WP_013904794.1 20548..21309(-) (pptA) [Pyrococcus yayanosii CH1]
MIEVERLTKRYGGAIAVNDITFTVNDGEIYGLLGPNGSGKSTTLKIIAGIIKPTSGRVIVEGIDVLKDPMAVKRISGYVP
ETPVLYESLTPTEFFSFVGSVRGIEEDVLEDRVRRLVEAFGIEKYMNQLIGTLSFGTRQKISLISALLHDPKVLILDEAM
NGLDPKSARVFRELLMEFKAESKSIIFSTHVLALAELVCDRIGLIHNGKLIAEGTVEELKELAKEESLEDVFLKLTEAKD
EVAILVNVLKEAL

Nucleotide


Download         Length: 762 bp        

>NTDB_id=34144 PYCH_RS00125 WP_013904794.1 20548..21309(-) (pptA) [Pyrococcus yayanosii CH1]
ATGATTGAAGTCGAGAGGCTCACGAAAAGGTATGGAGGAGCGATAGCCGTTAATGACATCACGTTCACCGTTAATGACGG
GGAGATATACGGACTTCTTGGACCCAACGGAAGCGGTAAATCCACGACCCTAAAGATAATAGCCGGCATAATAAAGCCAA
CGTCCGGAAGAGTCATCGTCGAGGGCATAGACGTCCTCAAAGACCCCATGGCCGTGAAAAGAATTTCAGGCTACGTCCCC
GAGACTCCCGTCCTCTACGAGAGCCTCACCCCCACGGAGTTCTTCAGCTTCGTGGGAAGCGTGAGGGGAATCGAGGAAGA
CGTGCTGGAGGACAGGGTAAGGCGACTAGTGGAGGCCTTCGGCATAGAGAAATACATGAACCAGCTTATAGGAACCCTGA
GCTTCGGGACAAGGCAGAAGATCTCCCTCATAAGTGCTCTCCTCCACGATCCAAAAGTTCTGATTCTCGATGAAGCCATG
AACGGCCTCGACCCTAAGAGTGCCCGCGTTTTCAGGGAACTTCTCATGGAATTCAAGGCCGAGAGCAAGAGCATAATCTT
CTCCACCCACGTTCTGGCCCTTGCAGAGCTCGTCTGCGACAGGATAGGTCTCATCCACAACGGAAAACTGATAGCAGAAG
GAACCGTCGAGGAGCTCAAGGAGCTCGCAAAAGAGGAGAGCCTCGAGGACGTCTTCCTAAAGCTGACGGAGGCCAAGGAT
GAGGTCGCTATCCTAGTGAACGTCCTAAAGGAGGCCCTGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(18-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8AFC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

38.272

96.047

0.368
  pptA Streptococcus thermophilus LMD-9

37.86

96.047

0.364

Multiple sequence alignment