Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F4V23_RS01305 Genome accession   NZ_CP044175
Coordinates   263631..264125 (-) Length   164 a.a.
NCBI ID   WP_002807365.1    Uniprot ID   -
Organism   Campylobacter coli strain AR-0411     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 258631..269125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS01285 metE 259251..261515 (-) 2265 WP_002845672.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  F4V23_RS01290 - 261538..262308 (-) 771 WP_002845675.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  F4V23_RS01295 - 262322..263314 (-) 993 WP_002807373.1 isopenicillin N synthase family oxygenase -
  F4V23_RS01305 luxS 263631..264125 (-) 495 WP_002807365.1 S-ribosylhomocysteine lyase Regulator
  F4V23_RS01310 gatB 264240..265658 (+) 1419 WP_002781309.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  F4V23_RS01315 - 265658..266557 (+) 900 WP_002807362.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  F4V23_RS01320 - 266566..267747 (+) 1182 WP_023890235.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18314.25 Da        Isoelectric Point: 6.3290

>NTDB_id=341435 F4V23_RS01305 WP_002807365.1 263631..264125(-) (luxS) [Campylobacter coli strain AR-0411]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDVLNVSDQNKIPELNIYQCGTCAMHSLNEAKEIAQKVLNSSIGVMNNKELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=341435 F4V23_RS01305 WP_002807365.1 263631..264125(-) (luxS) [Campylobacter coli strain AR-0411]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCACCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCGGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATGTTTTAAATGTAAGCGATCAAAACAAAATTCCTGAACTCAATATCTATCAATGCGGAACTTGTGCTATGC
ATTCCTTAAATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTAGTATAGGTGTGATGAATAATAAAGAATTAAAA
CTTGAAAATATTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment