Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   F4V26_RS06425 Genome accession   NZ_CP044169
Coordinates   1253050..1253433 (-) Length   127 a.a.
NCBI ID   WP_002870088.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0414     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1248050..1258433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V26_RS06400 aspS 1248613..1250364 (+) 1752 WP_032581037.1 aspartate--tRNA ligase -
  F4V26_RS06405 adk 1250361..1250939 (+) 579 WP_002859580.1 adenylate kinase -
  F4V26_RS06410 ppa 1250949..1251467 (+) 519 WP_002852138.1 inorganic diphosphatase -
  F4V26_RS06415 msrA 1251509..1252006 (+) 498 WP_044261215.1 peptide-methionine (S)-S-oxide reductase MsrA -
  F4V26_RS06420 - 1252182..1253021 (-) 840 WP_150969872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  F4V26_RS06425 dprB 1253050..1253433 (-) 384 WP_002870088.1 Holliday junction resolvase RuvX Machinery gene
  F4V26_RS06430 dprA 1253430..1254203 (-) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  F4V26_RS06435 - 1254193..1255275 (-) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  F4V26_RS06440 ilvC 1255279..1256301 (-) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  F4V26_RS06445 - 1256420..1258354 (+) 1935 WP_002870085.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14158.69 Da        Isoelectric Point: 9.0848

>NTDB_id=341368 F4V26_RS06425 WP_002870088.1 1253050..1253433(-) (dprB) [Campylobacter jejuni strain AR-0414]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=341368 F4V26_RS06425 WP_002870088.1 1253050..1253433(-) (dprB) [Campylobacter jejuni strain AR-0414]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGTATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
GAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment