Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F4V26_RS03285 Genome accession   NZ_CP044169
Coordinates   634498..635364 (+) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0414     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629498..640364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V26_RS03260 - 629933..631192 (-) 1260 WP_002867371.1 ComEC/Rec2 family competence protein -
  F4V26_RS03265 - 631192..631749 (-) 558 WP_002852823.1 DedA family protein -
  F4V26_RS03270 rny 631758..633311 (-) 1554 WP_002869639.1 ribonuclease Y -
  F4V26_RS03275 - 633232..633858 (-) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  F4V26_RS03280 - 633941..634498 (+) 558 WP_002869638.1 TlpA disulfide reductase family protein -
  F4V26_RS03285 pilA 634498..635364 (+) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  F4V26_RS03290 radA 635364..636704 (+) 1341 WP_002859284.1 DNA repair protein RadA Machinery gene
  F4V26_RS03295 atpB 636773..637453 (+) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  F4V26_RS03300 - 637450..637641 (+) 192 WP_002852856.1 membrane protein -
  F4V26_RS03305 metF 637663..638511 (-) 849 WP_002860436.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=341352 F4V26_RS03285 WP_002852840.1 634498..635364(+) (pilA) [Campylobacter jejuni strain AR-0414]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=341352 F4V26_RS03285 WP_002852840.1 634498..635364(+) (pilA) [Campylobacter jejuni strain AR-0414]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434