Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F4V31_RS08790 Genome accession   NZ_CP044162
Coordinates   1681842..1682336 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain AR-0419     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676842..1687336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS08775 - 1678228..1679406 (-) 1179 WP_002927156.1 metal-dependent hydrolase -
  F4V31_RS08780 gpsA 1679416..1680312 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  F4V31_RS08785 gatB 1680309..1681727 (-) 1419 WP_002927159.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  F4V31_RS08790 luxS 1681842..1682336 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  F4V31_RS08795 - 1682647..1683639 (+) 993 WP_002867376.1 isopenicillin N synthase family oxygenase -
  F4V31_RS08800 - 1683650..1684420 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  F4V31_RS08805 metE 1684432..1686696 (+) 2265 WP_002927161.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=341285 F4V31_RS08790 WP_002860433.1 1681842..1682336(+) (luxS) [Campylobacter jejuni strain AR-0419]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=341285 F4V31_RS08790 WP_002860433.1 1681842..1682336(+) (luxS) [Campylobacter jejuni strain AR-0419]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment