Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   F4V31_RS05210 Genome accession   NZ_CP044162
Coordinates   982109..982762 (-) Length   217 a.a.
NCBI ID   WP_011049704.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0419     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 977109..987762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS09175 - 977936..978169 (-) 234 WP_191904582.1 helix-turn-helix domain-containing protein -
  F4V31_RS05175 - 978153..978410 (-) 258 WP_002865124.1 hypothetical protein -
  F4V31_RS05180 - 978401..978670 (-) 270 WP_002874357.1 hypothetical protein -
  F4V31_RS05185 - 979232..979504 (-) 273 WP_011049699.1 hypothetical protein -
  F4V31_RS05190 - 979684..980454 (+) 771 WP_041176815.1 SEL1-like repeat protein -
  F4V31_RS05195 - 980473..980844 (-) 372 WP_011049701.1 hypothetical protein -
  F4V31_RS05200 - 980834..981367 (-) 534 WP_011049702.1 hypothetical protein -
  F4V31_RS05205 - 981364..982029 (-) 666 WP_011049703.1 hypothetical protein -
  F4V31_RS05210 CJE0566 982109..982762 (-) 654 WP_011049704.1 DNA/RNA non-specific endonuclease Regulator
  F4V31_RS05215 - 982768..983481 (-) 714 WP_041176817.1 hypothetical protein -
  F4V31_RS05220 - 983468..984256 (-) 789 WP_011049706.1 HipA family kinase -
  F4V31_RS05225 - 984253..984986 (-) 734 Protein_998 S24 family peptidase -
  F4V31_RS05230 - 985098..985322 (+) 225 WP_011049708.1 hypothetical protein -
  F4V31_RS05235 - 985319..985747 (+) 429 WP_011049709.1 hypothetical protein -
  F4V31_RS05240 - 985744..986121 (+) 378 WP_011049710.1 hypothetical protein -
  F4V31_RS05245 - 986118..987119 (+) 1002 WP_011049711.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25608.19 Da        Isoelectric Point: 9.7916

>NTDB_id=341268 F4V31_RS05210 WP_011049704.1 982109..982762(-) (CJE0566) [Campylobacter jejuni strain AR-0419]
MKKLILLPLLSTLAFADYTQYKPSEEFAKYFTKQSCSQVLDKFYYLNCYDYNLKGTKAVAYKLEVDNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVASKLGSLEVL
NLVNYDNNPQRIRNQIAIPSSYIKILKGENFKECYQVPNHEVEDENIRKYKIDCDKI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=341268 F4V31_RS05210 WP_011049704.1 982109..982762(-) (CJE0566) [Campylobacter jejuni strain AR-0419]
ATGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCTTTTGCTGACTATACGCAATATAAACCAAGCGAAGAGTT
TGCTAAGTATTTTACTAAGCAAAGTTGTTCGCAAGTTTTAGATAAATTCTATTATCTAAATTGCTATGATTATAATCTAA
AAGGTACTAAAGCAGTGGCTTATAAATTAGAAGTAGATAATCTAAAAGGCGAACAAATCAAAAAGCGCCCGCGCTTTGAA
GATGATACAAATATCCCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACACACTCT
TTCTAATGCCTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACATTCTTAATGAGTAATATTACTCCACAAAATCCAC
AAATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTCAAAGCTTGGAAGTTTAGAAGTTTTA
AATTTAGTTAATTATGACAATAATCCACAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTATATTAAAATCTTAAA
AGGTGAGAATTTTAAAGAATGTTACCAAGTACCAAATCATGAAGTTGAAGATGAGAATATAAGAAAATATAAGATTGATT
GTGATAAAATATAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

100

100

1
  CJE1441 Campylobacter jejuni RM1221

91.163

99.078

0.903

Multiple sequence alignment