Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CTB_RS01590 Genome accession   NC_012687
Coordinates   333456..334820 (+) Length   454 a.a.
NCBI ID   WP_012728097.1    Uniprot ID   -
Organism   Chlamydia trachomatis B/TZ1A828/OT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328456..339820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTB_RS01565 (CTB_2881) accD 328518..329444 (-) 927 WP_009871641.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  CTB_RS01570 (CTB_2891) - 329516..330136 (-) 621 WP_012728096.1 superoxide dismutase -
  CTB_RS01575 (CTB_2901) - 330268..332049 (-) 1782 WP_009871643.1 phospho-sugar mutase -
  CTB_RS01580 (CTB_2911) - 332201..332668 (-) 468 WP_009871644.1 DUF5070 domain-containing protein -
  CTB_RS01585 (CTB_2921) rnc 332777..333472 (+) 696 WP_009871645.1 ribonuclease III -
  CTB_RS01590 (CTB_2931) radA 333456..334820 (+) 1365 WP_012728097.1 DNA repair protein RadA Machinery gene
  CTB_RS01595 (CTB_2941) - 334798..335523 (+) 726 WP_009871647.1 hydroxymethylbilane synthase -
  CTB_RS01600 (CTB_2951) - 335916..336263 (+) 348 WP_010725152.1 hypothetical protein -
  CTB_RS01605 (CTB_2961) pknD 336316..339120 (-) 2805 WP_012728098.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49765.21 Da        Isoelectric Point: 7.5070

>NTDB_id=34125 CTB_RS01590 WP_012728097.1 333456..334820(+) (radA) [Chlamydia trachomatis B/TZ1A828/OT]
MTTKIKTQWTCTECGTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRIHTQAQGWNRLL
GGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESVSQTSLRAQRLQISSNNIFLFPETNLEDIKQQID
NIAPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNA
HANYRMIRSVKNRFGPTNELLILSIHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLIEVQALVSSSPFSNPV
RKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIR
HVSHMEHRIKESIIMGFKGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=34125 CTB_RS01590 WP_012728097.1 333456..334820(+) (radA) [Chlamydia trachomatis B/TZ1A828/OT]
ATGACAACAAAAATTAAAACACAGTGGACGTGTACAGAATGTGGCACACATTCTCCAAAATGGTTGGGACAATGTTCTGG
ATGTCTCCAGTGGAATACACTAGTCGAAGAAAGAACAGCTCCTAAACTAAACACATCTTCTTACTCCTCTAGCTCTTCTA
TTCCCATACCACTAAACAATGTGGAATTTCAGGAAGAAATACGAATTCATACCCAAGCTCAAGGCTGGAATCGCCTTCTA
GGAGGAGGAACGGTCCGAGGTAGCCTCGCTCTATTGGGAGGAGAGCCTGGCATAGGAAAGTCTACTTTACTACTTCAAAT
TTCCTCACAATTCGCGGCAGCTGGTCATAAAGTGTTGTACGTTTGCGGAGAAGAATCCGTGTCCCAAACTTCATTACGAG
CCCAACGCCTGCAAATCTCTAGCAACAATATTTTCCTATTCCCAGAAACAAATCTTGAAGACATCAAACAACAGATTGAT
AACATTGCTCCAGACATATTAGTTATCGACTCTATCCAGATCATTTTTTCTCCATCCTTAAGCTCTGCTCCAGGATCGGT
TGCTCAAGTGAGAGAAACGACCGCAGAGCTCATGCATATAGCAAAACAAAAACAGATCACAACCTTTATTATTGGACATG
TCACTAAATCTGGAGAAATCGCTGGCCCACGTATCCTAGAACACTTAGTAGACACTGTTCTCTATTTTGAAGGTAATGCG
CATGCTAATTACCGTATGATTCGCTCTGTTAAGAATCGTTTCGGCCCAACCAATGAATTATTAATTTTATCCATACATAC
AGATGGATTACGCGAAGTAGAAAATCCGTCAGGTCTCTTTCTACAAGAAAAAATTGTAGAAACTACAGGCTCTACCATTA
TCCCTATTGTAGAAGGCTCTGAAACTCTTCTTATAGAAGTTCAGGCTCTCGTTTCTTCATCCCCATTTTCTAATCCTGTA
CGAAAAACATCCGGATTTGATCCAAACCGATTTTCTTTACTCTTAGCTGTTTTAGAAAAAAGAGCGAATGTTAAATTATA
TACATCCGATGTCTTCCTTTCTATCGCTGGAGGCTTGAAAATCACACAACCTTCGGCAGACTTAGGAGCGGTGTTATCGG
TGGTGTCTTCCCTATATAACCGCTATTTACCTAAAAATTATACCTATACTGGAGAGATCGGCCTAGGAGGAGAAATTCGT
CACGTTTCACACATGGAACACCGCATAAAAGAAAGCATTATTATGGGGTTTAAAGGTATCGTGATGCCTTTTGGGCAGAT
AAAAGGCTTACCTAAAGAATTTCTGGATCAAATTGATATTATTGGAGTAAAAACAATTAAAGATGCTGTCCGCTTACTAC
AATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.489
  radA Streptococcus pneumoniae Rx1

46.903

99.559

0.467
  radA Streptococcus pneumoniae D39

46.903

99.559

0.467
  radA Streptococcus pneumoniae R6

46.903

99.559

0.467
  radA Streptococcus pneumoniae TIGR4

46.903

99.559

0.467
  radA Streptococcus mitis NCTC 12261

46.681

99.559

0.465
  radA Streptococcus mitis SK321

46.222

99.119

0.458

Multiple sequence alignment