Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F4V32_RS00750 Genome accession   NZ_CP044161
Coordinates   144545..145093 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain AR-0420     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 139545..150093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V32_RS00720 ctsT 139588..139893 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  F4V32_RS00725 proC 139890..140627 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  F4V32_RS00730 fliW 140627..141016 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  F4V32_RS00735 - 141180..141827 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  F4V32_RS00740 lon 141843..144218 (+) 2376 WP_002783351.1 endopeptidase La -
  F4V32_RS00745 rpsR 144274..144534 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  F4V32_RS00750 ssb 144545..145093 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  F4V32_RS00755 rpsF 145102..145479 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  F4V32_RS00760 - 145759..147030 (+) 1272 WP_150966198.1 MFS transporter -
  F4V32_RS00765 - 147030..148031 (+) 1002 WP_150966200.1 sugar phosphate isomerase/epimerase -
  F4V32_RS00770 - 148024..148881 (-) 858 Protein_153 VirK family antimicrobial peptide resistance protein -
  F4V32_RS00775 rseP 148878..149981 (-) 1104 WP_002787897.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=341203 F4V32_RS00750 WP_002777084.1 144545..145093(-) (ssb) [Campylobacter coli strain AR-0420]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=341203 F4V32_RS00750 WP_002777084.1 144545..145093(-) (ssb) [Campylobacter coli strain AR-0420]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379