Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   F4V39_RS04555 Genome accession   NZ_CP044148
Coordinates   852397..852873 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O157 strain AR-0427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 847397..857873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V39_RS04520 - 847562..848467 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  F4V39_RS04525 - 848464..849534 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  F4V39_RS04530 - 849670..850353 (+) 684 WP_000775497.1 hypothetical protein -
  F4V39_RS04535 - 850369..850779 (+) 411 WP_000846711.1 hypothetical protein -
  F4V39_RS04545 - 851000..851821 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  F4V39_RS04550 - 851903..852382 (+) 480 WP_000860080.1 antirestriction protein -
  F4V39_RS04555 radC 852397..852873 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  F4V39_RS04560 yeeT 852936..853157 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  F4V39_RS04565 cbeA 853231..853599 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  F4V39_RS04570 cbtA 853688..854061 (+) 374 Protein_882 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  F4V39_RS04575 yeeW 854058..854252 (+) 195 WP_000988600.1 DUF5983 family protein -
  F4V39_RS04580 - 854298..854378 (+) 81 Protein_884 hypothetical protein -
  F4V39_RS29705 - 854667..854774 (-) 108 WP_074147515.1 transposase domain-containing protein -
  F4V39_RS30200 - 854726..855049 (+) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  F4V39_RS04595 tmaR 855150..855479 (-) 330 WP_000450409.1 DUF496 family protein -
  F4V39_RS04600 yeeA 855651..856709 (-) 1059 WP_001202488.1 FUSC family protein -
  F4V39_RS04605 sbmC 856908..857381 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=341122 F4V39_RS04555 WP_001186192.1 852397..852873(+) (radC) [Escherichia coli O157 strain AR-0427]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=341122 F4V39_RS04555 WP_001186192.1 852397..852873(+) (radC) [Escherichia coli O157 strain AR-0427]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment