Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F4V40_RS13630 Genome accession   NZ_CP044145
Coordinates   2503479..2504906 (+) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O157 strain AR-0428     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2498479..2509906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V40_RS13590 yeeW 2498662..2498856 (+) 195 WP_000988600.1 DUF5983 family protein -
  F4V40_RS13595 - 2498902..2498982 (+) 81 Protein_2589 hypothetical protein -
  F4V40_RS29880 - 2499271..2499378 (-) 108 WP_074147515.1 transposase domain-containing protein -
  F4V40_RS30275 - 2499330..2499653 (+) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  F4V40_RS13610 tmaR 2499754..2500083 (-) 330 WP_000450409.1 DUF496 family protein -
  F4V40_RS13615 yeeA 2500255..2501313 (-) 1059 WP_001202488.1 FUSC family protein -
  F4V40_RS13620 sbmC 2501512..2501985 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  F4V40_RS13625 dacD 2502104..2503270 (-) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  F4V40_RS13630 sbcB 2503479..2504906 (+) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  F4V40_RS13635 tsuB 2504949..2505176 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  F4V40_RS13640 tsuA 2505190..2506248 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  F4V40_RS13645 plaP 2506427..2507785 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  F4V40_RS13650 yoeI 2507775..2507837 (-) 63 WP_010723108.1 membrane protein YoeI -
  F4V40_RS13655 yeeY 2508052..2508981 (-) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  F4V40_RS13660 yeeZ 2509027..2509851 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=341059 F4V40_RS13630 WP_000980540.1 2503479..2504906(+) (sbcB) [Escherichia coli O157 strain AR-0428]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=341059 F4V40_RS13630 WP_000980540.1 2503479..2504906(+) (sbcB) [Escherichia coli O157 strain AR-0428]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581