Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F4V40_RS01320 Genome accession   NZ_CP044145
Coordinates   269273..269878 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157 strain AR-0428     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 264273..274878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V40_RS01290 rsmS 264975..265139 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  F4V40_RS01295 priC 265153..265680 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  F4V40_RS01300 ybaN 265750..266127 (+) 378 WP_001188905.1 DUF454 family protein -
  F4V40_RS01305 apt 266280..266831 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  F4V40_RS01310 dnaX 266960..268891 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  F4V40_RS01315 ybaB 268944..269273 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  F4V40_RS01320 recR 269273..269878 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  F4V40_RS01325 htpG 269988..271862 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  F4V40_RS01330 adk 272043..272687 (+) 645 WP_001220233.1 adenylate kinase -
  F4V40_RS01335 hemH 272819..273781 (+) 963 WP_001250105.1 ferrochelatase -
  F4V40_RS01340 aes 273778..274737 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=341038 F4V40_RS01320 WP_001195025.1 269273..269878(+) (recR) [Escherichia coli O157 strain AR-0428]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=341038 F4V40_RS01320 WP_001195025.1 269273..269878(+) (recR) [Escherichia coli O157 strain AR-0428]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443