Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F4V41_RS23315 Genome accession   NZ_CP044143
Coordinates   4505858..4507285 (-) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O157 strain AR-0429     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4500858..4512285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V41_RS23285 yeeZ 4500913..4501737 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  F4V41_RS23290 yeeY 4501783..4502712 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  F4V41_RS23295 yoeI 4502927..4502989 (+) 63 WP_010723108.1 membrane protein YoeI -
  F4V41_RS23300 plaP 4502979..4504337 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  F4V41_RS23305 tsuA 4504516..4505574 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  F4V41_RS23310 tsuB 4505588..4505815 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  F4V41_RS23315 sbcB 4505858..4507285 (-) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  F4V41_RS23320 dacD 4507494..4508660 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  F4V41_RS23325 sbmC 4508779..4509252 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  F4V41_RS23330 yeeA 4509451..4510509 (+) 1059 WP_001202488.1 FUSC family protein -
  F4V41_RS23335 tmaR 4510681..4511010 (+) 330 WP_000450409.1 DUF496 family protein -
  F4V41_RS23340 - 4511111..4511293 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  F4V41_RS23345 - 4511347..4511493 (+) 147 Protein_4285 transposase domain-containing protein -
  F4V41_RS23350 - 4511782..4511862 (-) 81 Protein_4286 hypothetical protein -
  F4V41_RS23355 yeeW 4511908..4512102 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=341022 F4V41_RS23315 WP_000980540.1 4505858..4507285(-) (sbcB) [Escherichia coli O157 strain AR-0429]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=341022 F4V41_RS23315 WP_000980540.1 4505858..4507285(-) (sbcB) [Escherichia coli O157 strain AR-0429]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment