Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F4V41_RS19460 Genome accession   NZ_CP044143
Coordinates   3721093..3721608 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli O157 strain AR-0429     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3716093..3726608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V41_RS19415 csrA 3716910..3717095 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  F4V41_RS19445 yqaB 3718323..3718889 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F4V41_RS19450 yqaA 3718886..3719314 (+) 429 WP_001287450.1 YqaA family protein -
  F4V41_RS19455 gshA 3719387..3720943 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  F4V41_RS19460 luxS 3721093..3721608 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  F4V41_RS19465 emrB 3721672..3723210 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  F4V41_RS19470 emrA 3723227..3724399 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F4V41_RS19475 emrR 3724526..3725056 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F4V41_RS19480 ygaH 3725147..3725482 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  F4V41_RS19485 ygaZ 3725472..3726209 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=341013 F4V41_RS19460 WP_001130215.1 3721093..3721608(+) (luxS) [Escherichia coli O157 strain AR-0429]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=341013 F4V41_RS19460 WP_001130215.1 3721093..3721608(+) (luxS) [Escherichia coli O157 strain AR-0429]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment