Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F4V41_RS07575 Genome accession   NZ_CP044143
Coordinates   1239386..1239991 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157 strain AR-0429     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234386..1244991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V41_RS07555 aes 1234527..1235486 (+) 960 WP_000801803.1 acetyl esterase -
  F4V41_RS07560 hemH 1235483..1236445 (-) 963 WP_001250105.1 ferrochelatase -
  F4V41_RS07565 adk 1236577..1237221 (-) 645 WP_001220233.1 adenylate kinase -
  F4V41_RS07570 htpG 1237402..1239276 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  F4V41_RS07575 recR 1239386..1239991 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  F4V41_RS07580 ybaB 1239991..1240320 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  F4V41_RS07585 dnaX 1240373..1242304 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  F4V41_RS07590 apt 1242433..1242984 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  F4V41_RS07595 ybaN 1243137..1243514 (-) 378 WP_001188905.1 DUF454 family protein -
  F4V41_RS07600 priC 1243584..1244111 (+) 528 WP_000844886.1 primosomal replication protein N'' -
  F4V41_RS07605 rsmS 1244125..1244289 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=340964 F4V41_RS07575 WP_001195025.1 1239386..1239991(-) (recR) [Escherichia coli O157 strain AR-0429]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=340964 F4V41_RS07575 WP_001195025.1 1239386..1239991(-) (recR) [Escherichia coli O157 strain AR-0429]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443