Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F4V42_RS20345 Genome accession   NZ_CP044140
Coordinates   3914992..3916419 (-) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O157 strain AR-0430     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3909992..3921419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V42_RS20315 yeeZ 3910047..3910871 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  F4V42_RS20320 yeeY 3910917..3911846 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  F4V42_RS20325 yoeI 3912061..3912123 (+) 63 WP_010723108.1 membrane protein YoeI -
  F4V42_RS20330 plaP 3912113..3913471 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  F4V42_RS20335 tsuA 3913650..3914708 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  F4V42_RS20340 tsuB 3914722..3914949 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  F4V42_RS20345 sbcB 3914992..3916419 (-) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  F4V42_RS20350 dacD 3916628..3917794 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  F4V42_RS20355 sbmC 3917913..3918386 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  F4V42_RS20360 yeeA 3918585..3919643 (+) 1059 WP_001202488.1 FUSC family protein -
  F4V42_RS20365 tmaR 3919815..3920144 (+) 330 WP_000450409.1 DUF496 family protein -
  F4V42_RS20370 - 3920245..3920427 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  F4V42_RS20375 - 3920481..3920627 (+) 147 Protein_3645 transposase domain-containing protein -
  F4V42_RS20380 - 3920916..3920996 (-) 81 Protein_3646 hypothetical protein -
  F4V42_RS20385 yeeW 3921042..3921236 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=340941 F4V42_RS20345 WP_000980540.1 3914992..3916419(-) (sbcB) [Escherichia coli O157 strain AR-0430]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=340941 F4V42_RS20345 WP_000980540.1 3914992..3916419(-) (sbcB) [Escherichia coli O157 strain AR-0430]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment