Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SGPB_RS03640 Genome accession   NC_015600
Coordinates   707143..709353 (+) Length   736 a.a.
NCBI ID   WP_013851667.1    Uniprot ID   F5X5S9
Organism   Streptococcus pasteurianus ATCC 43144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 702143..714353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS03615 (SGPB_0670) miaA 702482..703369 (+) 888 WP_003064153.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  SGPB_RS03620 (SGPB_0671) hflX 703508..704746 (+) 1239 WP_003064155.1 GTPase HflX -
  SGPB_RS03625 (SGPB_0672) - 704739..705377 (+) 639 WP_003064158.1 hypothetical protein -
  SGPB_RS03630 (SGPB_0673) rnz 705417..706346 (+) 930 WP_003064159.1 ribonuclease Z -
  SGPB_RS03635 (SGPB_0674) - 706343..707101 (+) 759 WP_003064160.1 SDR family NAD(P)-dependent oxidoreductase -
  SGPB_RS03640 (SGPB_0675) recJ 707143..709353 (+) 2211 WP_013851667.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SGPB_RS03645 (SGPB_0676) - 709772..711394 (+) 1623 Protein_683 malolactic enzyme -
  SGPB_RS03650 (SGPB_0677) - 711450..712394 (+) 945 WP_003064165.1 AEC family transporter -
  SGPB_RS03655 (SGPB_0678) bsh 712517..713497 (+) 981 WP_013851669.1 choloylglycine hydrolase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82628.33 Da        Isoelectric Point: 4.3917

>NTDB_id=34093 SGPB_RS03640 WP_013851667.1 707143..709353(+) (recJ) [Streptococcus pasteurianus ATCC 43144]
MITSKYNWKNIEKEPDNGFFELTKKEKLTELASQILYSRGVDTAEKLIQFLSTDLSQLHDPYLLHDMDKAVNRIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFTDGYGPNESVYKYFIEQQNVSLIITVDNGVAGNEAIAYAQ
SQGVDVIVTDHHGLPAELPEAFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELIKVSDVDMADVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQKIFDEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRILEQIAQPVIVLNIEDGIAKGSARSIEAINIFHALDE
HRDLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEINLDTVHSLEKLAPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDFVAFNQGHLAQEFQQVQNLCLATTLSINKWNGQTTVQLMLEDARVE
GVQLIDIRSKTASLPERVPVLTEDSTANEVVVLDIPDKAEELKSLFVGRHFEAIYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFPEFDVRYKLKELSQYLNIPDILLIKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVKFQELMAL
ATPQEIYEWLINESDE

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=34093 SGPB_RS03640 WP_013851667.1 707143..709353(+) (recJ) [Streptococcus pasteurianus ATCC 43144]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATAATGGCTTTTTTGAGCTGACAAAAAAAGAAAA
ACTAACAGAATTAGCTAGTCAGATTCTTTATAGTCGAGGTGTTGATACGGCAGAAAAATTGATTCAATTTTTATCAACGG
ATTTGTCACAATTGCATGACCCTTACCTTTTACATGACATGGATAAAGCGGTTAATCGTATTCGCCAAGCTATTGAGAAT
TACGAGCAAATCTTGGTTTATGGTGATTATGATGCTGACGGAATGACTAGTGCCAGCATTATGAAAGAAGCCCTTGAAAT
GTTGGGTGCCGAAGCCCAAGTTTATCTGCCAAATCGTTTCACAGATGGTTACGGCCCAAATGAATCAGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATTACGGTGGACAATGGCGTAGCAGGGAACGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTCATTGTGACAGACCACCACGGTTTGCCAGCAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAGAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTTGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGC
ATTATGGTTAAAGTTGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATAAAAGTATCAGATGT
GGATATGGCAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGACC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGATGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAGCGCAAGGAAATTGTTCAGAAAATCTTCGATGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGCTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTTAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGATTGCTAAAGGTTCTGCCAGAAGTATCGAGGCCATTAATATTTTCCATGCTCTTGATGAG
CACCGTGATTTATTTGAAGCCTTTGGTGGACACGCTGGCGCTGCTGGAATGACTTTGGTGACTGAAAATCTTGATAAATT
ATCACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACTTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTCTCAGAGATTAACCTTGATACCGTGCACAGTCTTGAAAAATTGGCACCATTTGGCATGGACAATCCAAAACCA
GTCTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACTATGGGGCAAAATGGTGCGCATTTAAAATTAAAAATTGC
CCAAGGTACAACGGCAATTGACTTTGTTGCCTTTAATCAAGGACATCTGGCGCAGGAATTTCAACAAGTGCAAAATCTTT
GCCTTGCAACGACATTATCGATTAATAAGTGGAATGGGCAAACGACTGTTCAATTAATGTTGGAAGATGCGCGTGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACGGCTAGCCTTCCAGAACGTGTTCCAGTATTGACTGAAGATAGCACGGC
AAATGAAGTTGTGGTGTTAGACATCCCTGATAAGGCTGAAGAATTAAAATCACTCTTTGTGGGTCGTCATTTTGAAGCCA
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACACGTGACCAATTTGCTAAGCTTTATAAA
ACCATTTATCAATTCCCAGAATTTGATGTCCGCTACAAGTTGAAAGAATTGAGCCAATACCTTAATATCCCTGATATTTT
GCTCATTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACCATCACAGATGGTGTTATGGTCGTCAACAAAGATG
CTCAGAAACGCAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTAAATTCCAAGAATTGATGGCACTA
GCTACTCCCCAAGAAATATATGAGTGGTTGATTAATGAAAGTGATGAGTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5X5S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.164

100

0.673
  recJ Bacillus subtilis subsp. subtilis str. 168

39.226

100

0.413

Multiple sequence alignment